FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_EXISA (Ribosomal RNA small subunit methyltransferase G OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rsmG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  GK+  FREQ+DV  ARAVA M +LAEYCLPL +VGG FVA K     +E+ +++ A+ ++G                +R  VV  K R+TP KYPR AGTPAK PL
Sbjct:  127 RAEEFGKNKKFREQFDVVTARAVARMTVLAEYCLPLAKVGGSFVALKAAKVSDEMADAKNALAVLGGKEKATHQFLLPGEMSERNIVVVDKLRKTPGKYPRKAGTPAKEPL 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAW (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MW2) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAT (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAS (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MSSA476) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAR (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MRSA252) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAE (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Newman) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAC (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain COL) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAB (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTYELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA8 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain NCTC 8325) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA3 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_EXISA9.151e-2146.85Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAW1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAT1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAS1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAR1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAE1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAC1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAB1.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAA81.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAA31.195e-2045.05Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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