FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOAB (Ribosomal RNA small subunit methyltransferase G OS=Clostridium acetobutylicum GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G D  +RE++DVAV+RAVA M +L+E+CLP  RVGG  VA KG    +E+  +++A++++G +L ++ +VE ++   Q   VV  K   TPKKYPR AG  +K P+
Sbjct:  128 RAEDFGVDKDYREKFDVAVSRAVANMAVLSEFCLPFARVGGYLVALKGPGINDEISTAKKAIKVLGGTLDKVINVEFENEDFQHNLVVIKKQNGTPKKYPRKAGKVSKNPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ALKMQ (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT--AVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G++ + REQYD AVARAVA + +L EYCLP V+VGG F+  KG   +EE++NS+ A+ ++G  +++    E   PF   T   +V  K ++TP KYPR  GTP+K P+
Sbjct:  128 RAEECGQEETHREQYDYAVARAVASLNVLVEYCLPFVKVGGYFICQKGPQLKEEIQNSQNAITVLGGKVVE--QKEITLPFSDITHSLLVIEKIKQTPTKYPRKPGTPSKKPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACAC (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus acidophilus GN=rsmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 44/111 (39.64%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++  +RE++D+  ARAVA M +L+EYCLPLV+ GG F+A KG   ++E+ + ++A++++G  L++   +       +RT ++  K ++TPKKYPR AGTP + P+
Sbjct:  129 RAEDVGQNKLYREKFDLVTARAVARMSVLSEYCLPLVKKGGYFIALKGPKAEDELDDGQKALEVLGGKLVKEEELTLPHSKEERTLILVKKIKQTPKKYPRQAGTPRRKPI 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_OCEIH (Ribosomal RNA small subunit methyltransferase G OS=Oceanobacillus iheyensis GN=rsmG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  GK+ +FRE +D+  ARAVA M +L+E CLPLV+  G+F+A KG   +EE++  + A++L+G  + ++ +        +R+ ++  K R+TPKKYPR AG P K P+
Sbjct:  127 RAENFGKNKTFRESFDIVTARAVARMSVLSELCLPLVKKNGVFIAMKGAQAKEELEVGKPAIELLGGEVEEIHTFSLPIEESERSIILISKKRQTPKKYPRKAGLPNKEPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAN (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain N315) GN=rsmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPL++ GG FVA K    +EE++ ++ A+ ++G ++ +  + +     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAM (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rsmG PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPL++ GG FVA K    +EE++ ++ A+ ++G ++ +  + +     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA9 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH9) GN=rsmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPL++ GG FVA K    +EE++ ++ A+ ++G ++ +  + +     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA2 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPL++ GG FVA K    +EE++ ++ A+ ++G ++ +  + +     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA1 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rsmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YDV  ARAVA + +L+E CLPL++ GG FVA K    +EE++ ++ A+ ++G ++ +  + +     G+R   +  K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ALKOO (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 48/113 (42.48%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT--AVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G+   +RE+YD AV+RAVA + +L EYCLP V+VGG F+  KG    EE+ ++E+A++++G  +++  SV+   PF   T   +V  K ++TP KYPR AG P+K P+
Sbjct:  128 RAEDIGQSKDYREKYDYAVSRAVAALNVLVEYCLPFVKVGGYFICQKGPQIIEELPDAEKAIKVLGGEVVEQISVD--LPFSDITHHILVIKKIKQTPSKYPRKAGKPSKEPI 238          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_CLOAB1.195e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_ALKMQ1.195e-2044.25Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACAC1.561e-2039.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_OCEIH3.477e-2040.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAN4.542e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAAM4.542e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAA94.542e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAA24.542e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAA14.542e-2043.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_ALKOO4.542e-2042.48Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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