FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOAB (Ribosomal RNA small subunit methyltransferase G OS=Clostridium acetobutylicum GN=rsmG PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G D +RE++DVAV+RAVA M +L+E+CLP RVGG VA KG +E+ +++A++++G +L ++ +VE ++ Q VV K TPKKYPR AG +K P+ Sbjct: 128 RAEDFGVDKDYREKFDVAVSRAVANMAVLSEFCLPFARVGGYLVALKGPGINDEISTAKKAIKVLGGTLDKVINVEFENEDFQHNLVVIKKQNGTPKKYPRKAGKVSKNPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ALKMQ (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmG PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT--AVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G++ + REQYD AVARAVA + +L EYCLP V+VGG F+ KG +EE++NS+ A+ ++G +++ E PF T +V K ++TP KYPR GTP+K P+ Sbjct: 128 RAEECGQEETHREQYDYAVARAVASLNVLVEYCLPFVKVGGYFICQKGPQLKEEIQNSQNAITVLGGKVVE--QKEITLPFSDITHSLLVIEKIKQTPTKYPRKPGTPSKKPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACAC (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus acidophilus GN=rsmG PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20 Identity = 44/111 (39.64%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G++ +RE++D+ ARAVA M +L+EYCLPLV+ GG F+A KG ++E+ + ++A++++G L++ + +RT ++ K ++TPKKYPR AGTP + P+ Sbjct: 129 RAEDVGQNKLYREKFDLVTARAVARMSVLSEYCLPLVKKGGYFIALKGPKAEDELDDGQKALEVLGGKLVKEEELTLPHSKEERTLILVKKIKQTPKKYPRQAGTPRRKPI 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_OCEIH (Ribosomal RNA small subunit methyltransferase G OS=Oceanobacillus iheyensis GN=rsmG PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20 Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + GK+ +FRE +D+ ARAVA M +L+E CLPLV+ G+F+A KG +EE++ + A++L+G + ++ + +R+ ++ K R+TPKKYPR AG P K P+ Sbjct: 127 RAENFGKNKTFRESFDIVTARAVARMSVLSELCLPLVKKNGVFIAMKGAQAKEELEVGKPAIELLGGEVEEIHTFSLPIEESERSIILISKKRQTPKKYPRKAGLPNKEPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAN (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain N315) GN=rsmG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YDV ARAVA + +L+E CLPL++ GG FVA K +EE++ ++ A+ ++G ++ + + + G+R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAAM (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rsmG PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YDV ARAVA + +L+E CLPL++ GG FVA K +EE++ ++ A+ ++G ++ + + + G+R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA9 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH9) GN=rsmG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YDV ARAVA + +L+E CLPL++ GG FVA K +EE++ ++ A+ ++G ++ + + + G+R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA2 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH1) GN=rsmG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YDV ARAVA + +L+E CLPL++ GG FVA K +EE++ ++ A+ ++G ++ + + + G+R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAA1 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rsmG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YDV ARAVA + +L+E CLPL++ GG FVA K +EE++ ++ A+ ++G ++ + + + G+R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKGV-YRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ALKOO (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20 Identity = 48/113 (42.48%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT--AVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G+ +RE+YD AV+RAVA + +L EYCLP V+VGG F+ KG EE+ ++E+A++++G +++ SV+ PF T +V K ++TP KYPR AG P+K P+ Sbjct: 128 RAEDIGQSKDYREKYDYAVSRAVAALNVLVEYCLPFVKVGGYFICQKGPQIIEELPDAEKAIKVLGGEVVEQISVD--LPFSDITHHILVIKKIKQTPSKYPRKAGKPSKEPI 238 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |