FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DESRM (Ribosomal RNA small subunit methyltransferase G OS=Desulfotomaculum reducens (strain MI-1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.012e-19
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+    RE+YD  ++RAVA++++L+EYCLP  ++ G F++ KG D  EEVK + +A++++G SLL +  ++       R+ VV  K ++TP  YPR AG PAK P+
Sbjct:  129 RAEDFGQKKEHREKYDYVLSRAVAKLKVLSEYCLPCTKLDGYFISQKGPDIDEEVKEASKAIEVLGGSLLNIHKLQLPFINDGRSLVVIKKVKQTPSVYPRKAGIPAKKPI 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACJO (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus johnsonii GN=rsmG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G++   RE++D+   RAVA M +L+EYCLPL +VGG  VA KG   Q+E+  ++ A+ ++G  +  +  +        RT +V  K + TPKKYPR AGTP K PL
Sbjct:  129 RAEDAGQNKDLREKFDLVTGRAVARMSVLSEYCLPLAKVGGYLVALKGPKAQDELAEAKHAIDVLGGKVEDVKELTLPDTDDDRTLIVVEKIKATPKKYPRQAGTPNKKPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOTE (Ribosomal RNA small subunit methyltransferase G OS=Clostridium tetani GN=rsmG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +   FREQ+D  V+RAVA + +L+E+CLP +RVGG F+A KG +  EE+   ++A++L+G  L ++  VE +    +   V+  K + TP KYPR AG   K PL
Sbjct:  128 RAEDYAQKEEFREQFDGVVSRAVANISVLSEFCLPYIRVGGYFIAMKGPNVSEEIDEGKKAIELLGGKLQEIIQVEVEESDLKHNLVIIEKIKNTPNKYPRKAGMVTKKPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_PELTS (Ribosomal RNA small subunit methyltransferase G OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rsmG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +GKD   RE+Y   VARAVAE+ +LAEYCLP   VGG F+A KG   +EE   ++ A++++G  L ++ +++      +R+ VV  K   TP+KYPR  G P K PL
Sbjct:  129 RAEDVGKDPDHREKYGCVVARAVAELAVLAEYCLPAAGVGGCFLAMKGPKAEEEAVRAKDAIKILGGRLEEIINLKLPFTGDRRSLVVIRKIGETPEKYPRRPGVPQKRPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBB (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rsmG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +  + RE +D+A +RAVA M +L+E+CLP V++ G F+A KG   +EE+K+S++A+  +G  LL +C VE +    +   VV  K +  PK YPR AG   K P+
Sbjct:  128 RAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACGA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rsmG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G++ + RE++D+   RAVA M +L+EYC+PL +V G  VA KG   Q+E+  ++ A++++G  + ++  +       +RT +V  K + TPKKYPR AGTP K PL
Sbjct:  129 RAEDAGQNKNLREKFDLVTGRAVARMSVLSEYCIPLAKVDGYLVALKGPKAQDELVEAKNAIEVLGGRVEEVKELTLPDTDDERTLIVVKKVKATPKKYPRQAGTPNKKPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBA (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rsmG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +  + RE +D+A +RAVA M +L+E+CLP V++ G F+A KG   +EE+K+S++A+  +G  LL +C VE +    +   VV  K +  PK YPR AG   K P+
Sbjct:  128 RAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKVYPRKAGNVTKKPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLONN (Ribosomal RNA small subunit methyltransferase G OS=Clostridium novyi (strain NT) GN=rsmG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   K+  +RE++D  V+RAVA +  L+E+CLP V+VGG FVA KG    EEVK +++A+ ++G  L ++  VE +    +   V+  K + TPK+YPR  GT  K PL
Sbjct:  132 RAEEFAKNPKYREKFDAVVSRAVANLASLSEFCLPYVKVGGYFVALKGPAVDEEVKIAKKAISILGGKLEEIREVEIEDSDLKHNLVIIKKIKNTPKQYPRKPGTATKKPL 242          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BREBN (Ribosomal RNA small subunit methyltransferase G OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rsmG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G++  +RE++D+ VARAVA + +L+E+CLP  +VGG FVA KG +   E+  +++A++ +G    ++ + +     G+R  V+  K   TPK YPR AG PAK PL
Sbjct:  127 RAEDRGQEAMYREKFDLVVARAVARLNLLSEFCLPFAKVGGHFVALKGAEITPELAEAKKAIKTLGGKTRKVETFQLLEEAGERNIVIMEKIEATPKSYPRKAGVPAKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACH4 (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++  +RE++D+  ARAVA+M +L+EYCLPLV+  G FVA KG   ++E+   ++A+ ++G  L++   +       +RT V+  K + T KKYPR AGTP + P+
Sbjct:  129 RAEDVGQNKLYREKFDIVTARAVAKMSVLSEYCLPLVKKDGYFVALKGPKAEDELDEGKKALAVLGGKLIKDEELTLPGTTEERTLVLVKKVKETSKKYPRQAGTPRRKPI 239          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_DESRM1.012e-1940.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACJO1.726e-1941.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOTE2.254e-1940.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_PELTS2.944e-1943.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBB2.944e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACGA3.845e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBA3.845e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLONN5.021e-1941.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BREBN5.021e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACH46.558e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
back to top