FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DESRM (Ribosomal RNA small subunit methyltransferase G OS=Desulfotomaculum reducens (strain MI-1) GN=rsmG PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.012e-19 Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+ RE+YD ++RAVA++++L+EYCLP ++ G F++ KG D EEVK + +A++++G SLL + ++ R+ VV K ++TP YPR AG PAK P+ Sbjct: 129 RAEDFGQKKEHREKYDYVLSRAVAKLKVLSEYCLPCTKLDGYFISQKGPDIDEEVKEASKAIEVLGGSLLNIHKLQLPFINDGRSLVVIKKVKQTPSVYPRKAGIPAKKPI 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACJO (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus johnsonii GN=rsmG PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G++ RE++D+ RAVA M +L+EYCLPL +VGG VA KG Q+E+ ++ A+ ++G + + + RT +V K + TPKKYPR AGTP K PL Sbjct: 129 RAEDAGQNKDLREKFDLVTGRAVARMSVLSEYCLPLAKVGGYLVALKGPKAQDELAEAKHAIDVLGGKVEDVKELTLPDTDDDRTLIVVEKIKATPKKYPRQAGTPNKKPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOTE (Ribosomal RNA small subunit methyltransferase G OS=Clostridium tetani GN=rsmG PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + + FREQ+D V+RAVA + +L+E+CLP +RVGG F+A KG + EE+ ++A++L+G L ++ VE + + V+ K + TP KYPR AG K PL Sbjct: 128 RAEDYAQKEEFREQFDGVVSRAVANISVLSEFCLPYIRVGGYFIAMKGPNVSEEIDEGKKAIELLGGKLQEIIQVEVEESDLKHNLVIIEKIKNTPNKYPRKAGMVTKKPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_PELTS (Ribosomal RNA small subunit methyltransferase G OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rsmG PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +GKD RE+Y VARAVAE+ +LAEYCLP VGG F+A KG +EE ++ A++++G L ++ +++ +R+ VV K TP+KYPR G P K PL Sbjct: 129 RAEDVGKDPDHREKYGCVVARAVAELAVLAEYCLPAAGVGGCFLAMKGPKAEEEAVRAKDAIKILGGRLEEIINLKLPFTGDRRSLVVIRKIGETPEKYPRRPGVPQKRPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBB (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rsmG PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + + + RE +D+A +RAVA M +L+E+CLP V++ G F+A KG +EE+K+S++A+ +G LL +C VE + + VV K + PK YPR AG K P+ Sbjct: 128 RAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACGA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rsmG PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G++ + RE++D+ RAVA M +L+EYC+PL +V G VA KG Q+E+ ++ A++++G + ++ + +RT +V K + TPKKYPR AGTP K PL Sbjct: 129 RAEDAGQNKNLREKFDLVTGRAVARMSVLSEYCIPLAKVDGYLVALKGPKAQDELVEAKNAIEVLGGRVEEVKELTLPDTDDERTLIVVKKVKATPKKYPRQAGTPNKKPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBA (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rsmG PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + + + RE +D+A +RAVA M +L+E+CLP V++ G F+A KG +EE+K+S++A+ +G LL +C VE + + VV K + PK YPR AG K P+ Sbjct: 128 RAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKVYPRKAGNVTKKPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLONN (Ribosomal RNA small subunit methyltransferase G OS=Clostridium novyi (strain NT) GN=rsmG PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + K+ +RE++D V+RAVA + L+E+CLP V+VGG FVA KG EEVK +++A+ ++G L ++ VE + + V+ K + TPK+YPR GT K PL Sbjct: 132 RAEEFAKNPKYREKFDAVVSRAVANLASLSEFCLPYVKVGGYFVALKGPAVDEEVKIAKKAISILGGKLEEIREVEIEDSDLKHNLVIIKKIKNTPKQYPRKPGTATKKPL 242
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BREBN (Ribosomal RNA small subunit methyltransferase G OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rsmG PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G++ +RE++D+ VARAVA + +L+E+CLP +VGG FVA KG + E+ +++A++ +G ++ + + G+R V+ K TPK YPR AG PAK PL Sbjct: 127 RAEDRGQEAMYREKFDLVVARAVARLNLLSEFCLPFAKVGGHFVALKGAEITPELAEAKKAIKTLGGKTRKVETFQLLEEAGERNIVIMEKIEATPKSYPRKAGVPAKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACH4 (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19 Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G++ +RE++D+ ARAVA+M +L+EYCLPLV+ G FVA KG ++E+ ++A+ ++G L++ + +RT V+ K + T KKYPR AGTP + P+ Sbjct: 129 RAEDVGQNKLYREKFDIVTARAVAKMSVLSEYCLPLVKKDGYFVALKGPKAEDELDEGKKALAVLGGKLIKDEELTLPGTTEERTLVLVKKVKETSKKYPRQAGTPRRKPI 239 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |