FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOB8 (Ribosomal RNA small subunit methyltransferase G OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   KD+  RE +D+A +RAVA M +L+E CLP V+VGG F+A KG    +E+  S  A++++G  +L++C +  +    +   VV  K  R+PK YPR AG  +K P+
Sbjct:  128 RAEDGAKDIKLRENFDIATSRAVANMSVLSELCLPYVKVGGSFIALKGPSVDQEIIESTNAIKILGGKILEVCEINIEDTELKHNLVVVKKIDRSPKGYPRRAGLISKNPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CHLAD (Ribosomal RNA small subunit methyltransferase G OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG--ASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T+G++++ REQY+V  ARAVAE+R+L EY LPL+R+GG  +A KG DP +E+  ++RA+ ++G   S  +   +  + P   R+ V+  K   TP ++PR  G PA+ PL
Sbjct:  129 RIETVGRNLAEREQYEVVTARAVAELRVLVEYALPLLRIGGRLLAPKGRDPTDEIAAAQRALHVLGGEVSACEPVHIPGEEP---RSLVIITKIAPTPSRFPRAIGIPARRPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACLD (Ribosomal RNA small subunit methyltransferase G OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G+    RE YDV  ARAVA + +L+E CLPLV+  GLFVA K     EE++  ++A++ +G  +  + S +      +R  +V  K  +TPKK+PR  GTP K P+
Sbjct:  127 RAETFGRSKDHRESYDVVTARAVARLSVLSELCLPLVKKDGLFVALKAASADEEIETGKKAIKTLGGKIETVHSFQLPIEESERNIIVIKKQSQTPKKFPRKPGTPNKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOTN (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T  +    RE +DV  ARAVA M +LAE CLPL +VGG F+A K     EE+K  E+A+ ++G  +    +       G+RT +   K+++TP +YPR  GTP K P+
Sbjct:  127 RAETFARQKGMRESFDVVTARAVARMPVLAELCLPLTKVGGTFLAMKAASAPEELKEGEKAIAVLGGEVTATETFMLPFEEGERTIIFVQKTKKTPARYPRKPGTPNKQPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAES (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V +RE YD+  ARAVA + +L+E CLPLV  GG F+A K    +EE++ +  A+ ++G ++ +  + E     G+R  ++  K R+T KKYPR  GTP K PL
Sbjct:  127 RAETYGKGV-YRESYDIVTARAVARLTVLSELCLPLVNKGGQFLALKSSKGKEELQEATFAINILGGNVKETYTFELPENAGERQMIIIDKRRQTSKKYPRKPGTPNKSPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMO (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  S        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACSK (Ribosomal RNA small subunit methyltransferase G OS=Bacillus clausii (strain KSM-K16) GN=rsmG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  GK    RE YDVA+ARAVA M +L+E CLP V+VGG F+A KG    EEV   ++A+ ++G  L    S +      +R  V   K++ TP KYPR  G P K P+
Sbjct:  126 RAELAGKSKHHREIYDVAIARAVARMSVLSELCLPFVKVGGDFIALKGAGSNEEVAEGKKAIAVLGGELSASHSFQLPIEHSERQIVQIKKAKATPNKYPRKPGVPNKQPI 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_RUBXD (Ribosomal RNA small subunit methyltransferase G OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ---RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + + ++ + R +YD A+ARAVA + +LAEYC+PL+RVGG  VA KG  P+ E++  E A  ++GA L  +  V      G+   R  V+  K R TP +YPR AG PAK PL
Sbjct:  144 RVEAVAREAAHRSRYDAALARAVAALPVLAEYCVPLLRVGGHAVAMKGGMPEHELRLGEGAAAVLGARLSGVLEVPRLPEVGEEKRRRLVILEKRRETPGRYPRKAGVPAKRPL 257          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOSW (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus sp. (strain WCH70) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G+   FRE +D+  ARAVA M +L+E CLPLV+V G F+A K    QEE++  ++A+ ++G  +  +          +RT +   K R TP KYPR  G P K P+
Sbjct:  127 RAETFGRKKEFRESFDIVTARAVARMSVLSELCLPLVKVNGTFIAMKAASAQEELEQGKKAIDVLGGEISAIERFMLPIEQSERTIIFIQKVRNTPNKYPRKPGMPNKQPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAS1 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK   +R  YD+  ARAVA + +L+E CLPLV+ GG F+A K    +EE++ +   + ++G  +L   S E     G+R  ++  K  +TPKKYPR  GTP K PL
Sbjct:  127 RAETYGKG-DYRASYDIVTARAVARLSVLSELCLPLVKKGGHFIALKSSKGEEELEEARFGIGVLGGKVLDTISYELPEDAGERQMIIIDKRSQTPKKYPRKPGTPNKSPL 236          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_CLOB86.558e-1939.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CHLAD6.558e-1941.59Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACLD6.558e-1940.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_GEOTN8.565e-1940.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAES1.119e-1842.34Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISMO1.119e-1838.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACSK1.119e-1843.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_RUBXD1.461e-1843.86Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_GEOSW1.461e-1839.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAS11.908e-1841.44Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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