FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOB8 (Ribosomal RNA small subunit methyltransferase G OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19 Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + KD+ RE +D+A +RAVA M +L+E CLP V+VGG F+A KG +E+ S A++++G +L++C + + + VV K R+PK YPR AG +K P+ Sbjct: 128 RAEDGAKDIKLRENFDIATSRAVANMSVLSELCLPYVKVGGSFIALKGPSVDQEIIESTNAIKILGGKILEVCEINIEDTELKHNLVVVKKIDRSPKGYPRRAGLISKNPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CHLAD (Ribosomal RNA small subunit methyltransferase G OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19 Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG--ASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T+G++++ REQY+V ARAVAE+R+L EY LPL+R+GG +A KG DP +E+ ++RA+ ++G S + + + P R+ V+ K TP ++PR G PA+ PL Sbjct: 129 RIETVGRNLAEREQYEVVTARAVAELRVLVEYALPLLRIGGRLLAPKGRDPTDEIAAAQRALHVLGGEVSACEPVHIPGEEP---RSLVIITKIAPTPSRFPRAIGIPARRPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACLD (Ribosomal RNA small subunit methyltransferase G OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19 Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G+ RE YDV ARAVA + +L+E CLPLV+ GLFVA K EE++ ++A++ +G + + S + +R +V K +TPKK+PR GTP K P+ Sbjct: 127 RAETFGRSKDHRESYDVVTARAVARLSVLSELCLPLVKKDGLFVALKAASADEEIETGKKAIKTLGGKIETVHSFQLPIEESERNIIVIKKQSQTPKKFPRKPGTPNKSPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOTN (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19 Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T + RE +DV ARAVA M +LAE CLPL +VGG F+A K EE+K E+A+ ++G + + G+RT + K+++TP +YPR GTP K P+ Sbjct: 127 RAETFARQKGMRESFDVVTARAVARMPVLAELCLPLTKVGGTFLAMKAASAPEELKEGEKAIAVLGGEVTATETFMLPFEEGERTIIFVQKTKKTPARYPRKPGTPNKQPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAES (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18 Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK V +RE YD+ ARAVA + +L+E CLPLV GG F+A K +EE++ + A+ ++G ++ + + E G+R ++ K R+T KKYPR GTP K PL Sbjct: 127 RAETYGKGV-YRESYDIVTARAVARLTVLSELCLPLVNKGGQFLALKSSKGKEELQEATFAINILGGNVKETYTFELPENAGERQMIIIDKRRQTSKKYPRKPGTPNKSPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMO (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes GN=rsmG PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18 Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G++ + RE+YD+ ARAVA M +L+E C+PLV+ GG F+ K ++E++ +E+A++L G + + S +R V K++ TP KYPR GTP K+P+ Sbjct: 127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACSK (Ribosomal RNA small subunit methyltransferase G OS=Bacillus clausii (strain KSM-K16) GN=rsmG PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18 Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + GK RE YDVA+ARAVA M +L+E CLP V+VGG F+A KG EEV ++A+ ++G L S + +R V K++ TP KYPR G P K P+ Sbjct: 126 RAELAGKSKHHREIYDVAIARAVARMSVLSELCLPFVKVGGDFIALKGAGSNEEVAEGKKAIAVLGGELSASHSFQLPIEHSERQIVQIKKAKATPNKYPRKPGVPNKQPI 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_RUBXD (Ribosomal RNA small subunit methyltransferase G OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ---RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + + ++ + R +YD A+ARAVA + +LAEYC+PL+RVGG VA KG P+ E++ E A ++GA L + V G+ R V+ K R TP +YPR AG PAK PL Sbjct: 144 RVEAVAREAAHRSRYDAALARAVAALPVLAEYCVPLLRVGGHAVAMKGGMPEHELRLGEGAAAVLGARLSGVLEVPRLPEVGEEKRRRLVILEKRRETPGRYPRKAGVPAKRPL 257
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOSW (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus sp. (strain WCH70) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G+ FRE +D+ ARAVA M +L+E CLPLV+V G F+A K QEE++ ++A+ ++G + + +RT + K R TP KYPR G P K P+ Sbjct: 127 RAETFGRKKEFRESFDIVTARAVARMSVLSELCLPLVKVNGTFIAMKAASAQEELEQGKKAIDVLGGEISAIERFMLPIEQSERTIIFIQKVRNTPNKYPRKPGMPNKQPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAS1 (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK +R YD+ ARAVA + +L+E CLPLV+ GG F+A K +EE++ + + ++G +L S E G+R ++ K +TPKKYPR GTP K PL Sbjct: 127 RAETYGKG-DYRASYDIVTARAVARLSVLSELCLPLVKKGGHFIALKSSKGEEELEEARFGIGVLGGKVLDTISYELPEDAGERQMIIIDKRSQTPKKYPRKPGTPNKSPL 236 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |