FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACDB (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 45/111 (40.54%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G++ +RE++D+ ARAVA M +L+EYCLPL +VGG F+A KG EE+++++ A++ +G ++ + RT V+ K + TP KYPR AGTP + PL Sbjct: 129 RAEDVGQNPDYREKFDLVTARAVARMSVLSEYCLPLAKVGGKFLALKGPRADEELEDAKSALEKLGGEVVFTRVITLPGSAEVRTLVLVDKVKATPGKYPRQAGTPNRKPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISW6 (Ribosomal RNA small subunit methyltransferase G OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G++ + RE+YD+ ARAVA M +LAE C+PLV+ GG F+ K ++E++ +E+A++L G ++ S +R V K++ TP KYPR GTP K+P+ Sbjct: 127 RAETFGQNKAHREKYDLVTARAVARMSVLAELCIPLVKKGGSFLVMKAAQAEQELQIAEKAIKLFGGKVVDHFSFLLPVEESERNIYVINKTKETPNKYPRKPGTPNKLPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMF (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G++ + RE+YD+ ARAVA M +L+E C+PLV+ GG F+ K ++E++ +E+A++L G + + + +R V K++ TP KYPR GTP K+P+ Sbjct: 127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMC (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rsmG PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G++ + RE+YD+ ARAVA M +L+E C+PLV+ GG F+ K ++E++ +E+A++L G + + + +R V K++ TP KYPR GTP K+P+ Sbjct: 127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOKA (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus kaustophilus GN=rsmG PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T + RE +DV ARAVA M +L E CLPLV++GG F+A K EE+K +A+ ++G + + G+RT + K R+TP +YPR GTP K P+ Sbjct: 127 RAETFARQKGMRESFDVVTARAVARMPVLVELCLPLVKMGGTFIAMKAASALEELKEGNKAISVLGGEVTATETFTLPFDEGERTIIFIQKMRKTPNQYPRKPGTPNKQPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACSU (Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis GN=rsmG PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G+ RE YD+ ARAVA + +L+E CLPLV+ GLFVA K +EE+ ++A+ +G L + S + R +V K + TPKKYPR GTP K P+ Sbjct: 127 RAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAEQ (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rsmG PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + GK V +RE YD+ ARAVA + +L+E CLPLV+ GG F+A K +EE++ + A+ ++G ++ + + E G+R ++ K R+T KKYPR GTP K PL Sbjct: 127 RAEIYGKGV-YRESYDIVTARAVARLTVLSELCLPLVKKGGQFLALKSSKGEEELQEATFAINILGGNVKETHTFELPENAGERQMIIIDKRRQTSKKYPRKPGTPNKSPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISIN (Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua GN=rsmG PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18 Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T G++ + RE+YD+ ARAVA M +L+E C+PLV+ GG F+ K ++E++ +E+A++L G + + + +R V K++ TP KYPR GTP K+P+ Sbjct: 127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFALPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACDA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmG PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18 Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G++ +RE++D+ ARAVA M +L+EYCLPL +VGG F+A KG EE+++++ A++ +G ++ + RT V+ K TP KYPR AGTP + PL Sbjct: 129 RAEDVGQNPDYREKFDLVTARAVARMSVLSEYCLPLAKVGGKFLALKGPRADEELEDAKSALEKLGGEVVFTRVITLPGSTEVRTLVLVDKVEATPGKYPRQAGTPNRKPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACHD (Ribosomal RNA small subunit methyltransferase G OS=Bacillus halodurans GN=rsmG PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T + REQYD+ +ARAVA + +L+E CLPL +V G FVA KG EE+ ++ A++ +G S++Q +R ++ K R TPKKYPR GTP K PL Sbjct: 127 RAETFAQKKEHREQYDLVLARAVARLPVLSELCLPLAKVEGTFVAMKGAGANEELTAAQGALKKLGGSVIQNEQFTLPIEESERHVIIIRKERSTPKKYPRKPGTPNKQPL 237 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |