FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACDB (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 45/111 (40.54%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++  +RE++D+  ARAVA M +L+EYCLPL +VGG F+A KG    EE+++++ A++ +G  ++    +        RT V+  K + TP KYPR AGTP + PL
Sbjct:  129 RAEDVGQNPDYREKFDLVTARAVARMSVLSEYCLPLAKVGGKFLALKGPRADEELEDAKSALEKLGGEVVFTRVITLPGSAEVRTLVLVDKVKATPGKYPRQAGTPNRKPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISW6 (Ribosomal RNA small subunit methyltransferase G OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G++ + RE+YD+  ARAVA M +LAE C+PLV+ GG F+  K    ++E++ +E+A++L G  ++   S        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAETFGQNKAHREKYDLVTARAVARMSVLAELCIPLVKKGGSFLVMKAAQAEQELQIAEKAIKLFGGKVVDHFSFLLPVEESERNIYVINKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMF (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  +        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMC (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  +        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_GEOKA (Ribosomal RNA small subunit methyltransferase G OS=Geobacillus kaustophilus GN=rsmG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T  +    RE +DV  ARAVA M +L E CLPLV++GG F+A K     EE+K   +A+ ++G  +    +       G+RT +   K R+TP +YPR  GTP K P+
Sbjct:  127 RAETFARQKGMRESFDVVTARAVARMPVLVELCLPLVKMGGTFIAMKAASALEELKEGNKAISVLGGEVTATETFTLPFDEGERTIIFIQKMRKTPNQYPRKPGTPNKQPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACSU (Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis GN=rsmG PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G+    RE YD+  ARAVA + +L+E CLPLV+  GLFVA K    +EE+   ++A+  +G  L  + S +       R  +V  K + TPKKYPR  GTP K P+
Sbjct:  127 RAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAEQ (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rsmG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  GK V +RE YD+  ARAVA + +L+E CLPLV+ GG F+A K    +EE++ +  A+ ++G ++ +  + E     G+R  ++  K R+T KKYPR  GTP K PL
Sbjct:  127 RAEIYGKGV-YRESYDIVTARAVARLTVLSELCLPLVKKGGQFLALKSSKGEEELQEATFAINILGGNVKETHTFELPENAGERQMIIIDKRRQTSKKYPRKPGTPNKSPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISIN (Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua GN=rsmG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  +        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFALPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACDA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++  +RE++D+  ARAVA M +L+EYCLPL +VGG F+A KG    EE+++++ A++ +G  ++    +        RT V+  K   TP KYPR AGTP + PL
Sbjct:  129 RAEDVGQNPDYREKFDLVTARAVARMSVLSEYCLPLAKVGGKFLALKGPRADEELEDAKSALEKLGGEVVFTRVITLPGSTEVRTLVLVDKVEATPGKYPRQAGTPNRKPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACHD (Ribosomal RNA small subunit methyltransferase G OS=Bacillus halodurans GN=rsmG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T  +    REQYD+ +ARAVA + +L+E CLPL +V G FVA KG    EE+  ++ A++ +G S++Q           +R  ++  K R TPKKYPR  GTP K PL
Sbjct:  127 RAETFAQKKEHREQYDLVLARAVARLPVLSELCLPLAKVEGTFVAMKGAGANEELTAAQGALKKLGGSVIQNEQFTLPIEESERHVIIIRKERSTPKKYPRKPGTPNKQPL 237          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_LACDB1.908e-1840.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISW62.492e-1839.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISMF2.492e-1837.84Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISMC2.492e-1837.84Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_GEOKA2.492e-1839.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACSU2.492e-1841.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAEQ3.255e-1841.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISIN3.255e-1837.84Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACDA3.255e-1840.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACHD3.255e-1842.34Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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