FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LEUCK (Ribosomal RNA small subunit methyltransferase G OS=Leuconostoc citreum (strain KM20) GN=rsmG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 47/112 (41.96%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++V++REQ+D A ARA+A   +LAEY LP V+VGG  +  KG   ++E+ + ++A+  +G +L    + + + P G QR   V  K ++TPKKYPR AGTP K P+
Sbjct:  129 RAEDIGQNVAYREQFDFATARALARTSVLAEYTLPFVKVGGALLVMKGAAAEQELADGQQALATLGGTLSS--AFDFKLPNGDQRVIQVVDKHKKTPKKYPRQAGTPNKKPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STAHJ (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rsmG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK V+ RE YDV  ARAVA + +L+E CLPLV+ GG F+A K    +EE++ ++  + ++G       + +     G+R  ++  K R+T KKYPR  GTP K PL
Sbjct:  128 RAETFGKGVN-RETYDVVTARAVARLTVLSELCLPLVKKGGQFIALKSSKGEEELEEAQFGISILGGVFSDSYTFDLPEDAGERQMIIIDKRRQTSKKYPRKPGTPNKSPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACP2 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus pumilus (strain SAFR-032) GN=rsmG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G+    RE YD+  ARAVA + +L+E CLPLV+  GLFVA K     EE++  ++AV ++G  +++  S        +R  +V  K ++TPKKYPR  GTP K P+
Sbjct:  127 RAETFGQRKEKRESYDLVTARAVARLSVLSELCLPLVKKEGLFVALKASAADEEMQAGKKAVTVLGGEVVEKHSFVLPLEESERNIIVIEKKKQTPKKYPRKPGTPNKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LYSSC (Ribosomal RNA small subunit methyltransferase G OS=Lysinibacillus sphaericus (strain C3-41) GN=rsmG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+++ +REQYDV  ARAVA + +L+E C+PL + GG FVA K     EE+K++++A+  +G  L +  S +       R   +  K + TPKKYPR  G P K P+
Sbjct:  127 RAEEFGQNIKYREQYDVVTARAVARLSVLSELCVPLAKQGGYFVALKAAAGAEELKDAKKALTTLGVKLKEEYSFKLPVEESDRILYIFDKIKGTPKKYPRKPGVPNKTPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LISMH (Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rsmG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  +        +R   V  K++ TP KYPR  GTP K+P+
Sbjct:  127 RAEIFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACA2 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus amyloliquefaciens (strain FZB42) GN=rsmG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T G+    RE +D+  ARAVA + +L+E CLPL +  G+F A K     EE+K  ++A++++G  L Q+ S        +R  ++  K++ TPKKYPR  GTP K P+
Sbjct:  127 RAETFGQRKDVRESFDLVTARAVARLSVLSELCLPLAKKNGVFAALKAAAADEELKAGQKAIKVLGGELEQVHSFTLPVEESERNIMIIRKTKSTPKKYPRKPGTPNKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CARHZ (Ribosomal RNA small subunit methyltransferase G OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rsmG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + LG+   FRE +DV  +RAVAE+R+L E+  PL+R+GG  +  KG    EE+K +E+A + +G  L  +        FG+R+ VV  K + TP+ YPR  G P K PL
Sbjct:  125 RAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL 235          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DESHY (Ribosomal RNA small subunit methyltransferase G OS=Desulfitobacterium hafniense (strain Y51) GN=rsmG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +D  +RE +D   +RAVA + +L EY +PL++ GG F+AAKG   QEEV  S++A+ ++GA +  +      +    R  ++  K+  TP  YPR AGTP K PL
Sbjct:  128 RAEDFARDPHYRETFDCVTSRAVARLPVLLEYAVPLLKKGGYFLAAKGSQAQEEVMESKKALTVLGAEIKDIKLFNLGAEAEHRAIILVEKTSSTPPAYPRKAGTPGKKPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STACT (Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus carnosus (strain TM300) GN=rsmG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   73 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            RE YD+  ARAVA + +L+E CLPLV+ GG F+A K    +EE++ +   + + G  +  + + E     G+R  ++  K  +TPKKYPR AGTP K PL
Sbjct:  139 RESYDIVTARAVARLSVLSELCLPLVKTGGHFIAMKSSKGEEELEEARFGIGVFGGRVEAVETFELPGDAGERQMIIIEKRSKTPKKYPRKAGTPNKSPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ROSS1 (Ribosomal RNA small subunit methyltransferase G OS=Roseiflexus sp. (strain RS-1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL--CSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T+G+D   REQYDV  ARAVAE+  LAEYCLPL RV G  +A KG D  +EV  +  A++ +G  ++ +   ++    P   RT VV  K   T   YPR  G PA+ P+
Sbjct:  124 RAETVGRDPQHREQYDVVTARAVAELATLAEYCLPLCRVHGRVLAPKGSDIADEVARARTAIERLGGRVIDVEPVTIPGVEP---RTLVVIAKVAPTLAAYPRAVGVPARRPI 233          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_LEUCK4.251e-1841.96Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STAHJ5.552e-1841.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACP25.552e-1841.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LYSSC1.237e-1739.64Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LISMH1.237e-1736.94Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACA21.237e-1738.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CARHZ2.110e-1741.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_DESHY3.599e-1738.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STACT4.700e-1742.00Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_ROSS14.700e-1743.36Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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