FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ROSCS (Ribosomal RNA small subunit methyltransferase G OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rsmG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G+D   REQYDV  ARAVAE+  L EY LPL R+GG F+A KG    +EV  +  A+  +G  ++ +  VE       RT VV +K   TP  YPR  G PAK P+
Sbjct:  124 RAEVVGRDPQHREQYDVVTARAVAELATLVEYGLPLCRIGGRFLAPKGSAIDDEVVRARIAIARLGGQVIGVEPVEIPG-VELRTLVVIVKVAPTPAAYPRAVGIPAKRPI 233          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_MACCJ (Ribosomal RNA small subunit methyltransferase G OS=Macrococcus caseolyticus (strain JCSC5402) GN=rsmG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK   +RE +DV  ARAVA + +L+E CLPLV+ GG F+A KG   + EV+    A+ ++G ++++   +        R  +   K R+TPKKYPR  GTP K PL
Sbjct:  127 RAETFGKG-EYRESFDVVTARAVARLSVLSELCLPLVKKGGHFIALKGAQGEIEVEEGLFAISILGGAVVENHPLTLPEEESMRYILDIEKKRQTPKKYPRKPGTPNKEPL 236          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CHLAA (Ribosomal RNA small subunit methyltransferase G OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rsmG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE--SQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T+G++ + RE Y V  ARAVAE+R+L EY LPL+R+GG  +A KG  P+ E+  ++ A+ L+G  +     VE   + P   R+ V+  K+  TP ++PR  G PA+ PL
Sbjct:  129 RIETVGQNPTEREHYQVVTARAVAELRVLLEYALPLLRLGGHLLAPKGRHPEVEIAAAQNALALLGGEVSACLPVEIPDEEP---RSLVIVTKTAPTPNRFPRAVGIPARRPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_THEPX (Ribosomal RNA small subunit methyltransferase G OS=Thermoanaerobacter sp. (strain X514) GN=rsmG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +GKD+ +REQ+D++VARAVA + IL EY LP V+V G F+A KG + +EE++NS+RA++ +   + ++  ++          V+  K    P KYPR A    + PL
Sbjct:  130 RAEDIGKDIKYREQFDLSVARAVAPLNILLEYTLPFVKVDGYFIALKGREIEEEIENSQRALKELKGEIEEVKEIKLPYSDIVHHLVIIKKIDNCPTKYPRRANAIQRSPL 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DEIRA (Ribosomal RNA small subunit methyltransferase G OS=Deinococcus radiodurans GN=rsmG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +TLG+    R  YD  VARAVA + +LAE  LPL+RVGG+FVA KG   +EE+    RA   +G  ++++           RT +V  K R TP KYPR  G P   PL
Sbjct:  134 RAETLGQSAEHRGSYDRVVARAVAALPVLAELALPLLRVGGVFVAQKGPLSEEELDAGRRAAGEVGGRIIEVDPFTLPVSGDARTLIVLEKQRPTPAKYPRREGVPTHQPL 244          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_SYNJB (Ribosomal RNA small subunit methyltransferase G OS=Synechococcus sp. GN=rsmG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D   R  YD+A+ARA+A   I AEYCLPL++VGG  +  +GH  + E +  E+A++L+G  L+ + +  +    G R  ++  K   TP  YPR  GTP + PL
Sbjct:  144 RAEIWGQDPQERGSYDIALARALASAEICAEYCLPLLKVGGRAILYRGHWTEAEAQTLEQALELLGGKLIHVEAFTTPRSRGVRHCLLLEKVAPTPPPYPRSPGTPKRQPL 254          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LEUMM (Ribosomal RNA small subunit methyltransferase G OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rsmG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++  +RE +D A ARAVA   +LAEY LP V++GG F+  KG    +E+ + ++A+ ++G  + +        P G QR   +  K  +TPKKYPR AGTP+K P+
Sbjct:  129 RAEDIGQNPKYRENFDYATARAVARTSVLAEYTLPFVKIGGRFLVMKGSAAHQELLDGQKALAMLGGQVNE--EFVFTLPNGDQRYIQIVDKKTKTPKKYPRQAGTPSKKPI 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACPL (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus plantarum GN=rsmG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   55 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            GK  + RE YD+A ARAVA + +L+E CLPLV++GG  +A K  +   E      AVQ +G  ++Q  +         R  +V  K + +PK+YPR  GTPAK PL
Sbjct:  135 GKKSAHRESYDIATARAVARLSVLSELCLPLVKIGGQMIALKAANASTETAEGTYAVQQLGGQIVQDEAFSLPVTADPRHIIVIDKKKPSPKRYPRKPGTPAKQPL 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_THEP3 (Ribosomal RNA small subunit methyltransferase G OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rsmG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +GKD+ +REQ+D+++ARAVA + IL EY LP V+V G F+A KG + +EE++NS+RA++ +   + ++  ++          V+  K    P KYPR A    + PL
Sbjct:  130 RAEDIGKDIKYREQFDLSMARAVAPLNILLEYTLPFVKVDGYFIALKGREIEEEIENSQRALKELKGEIEEVKEIKLPYSDIVHHLVIIKKIDNCPTKYPRRANAIQRSPL 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CALS8 (Ribosomal RNA small subunit methyltransferase G OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rsmG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + LGK+V FRE +D A ARAV ++ +L EY LPL+++GG F+A KG + ++E+++++ A+ ++G  + ++          +R+ +V  K R+TP ++PR      K PL
Sbjct:  142 RAEELGKEVEFRESFDFAFARAVDKLNVLCEYALPLLKIGGAFLAQKGFECEDELESAKNAIAMLGGEIEKIEKFTLPESDEKRSIIVIRKLRQTPIEFPRKTKQIIKKPL 252          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_ROSCS1.047e-1644.14Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_MACCJ1.047e-1641.44Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CHLAA1.047e-1640.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_THEPX1.367e-1638.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_DEIRA1.367e-1643.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_SYNJB2.333e-1638.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LEUMM2.333e-1639.29Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACPL2.333e-1641.51Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_THEP33.046e-1637.84Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CALS83.046e-1636.04Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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