FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ROSCS (Ribosomal RNA small subunit methyltransferase G OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rsmG PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G+D REQYDV ARAVAE+ L EY LPL R+GG F+A KG +EV + A+ +G ++ + VE RT VV +K TP YPR G PAK P+ Sbjct: 124 RAEVVGRDPQHREQYDVVTARAVAELATLVEYGLPLCRIGGRFLAPKGSAIDDEVVRARIAIARLGGQVIGVEPVEIPG-VELRTLVVIVKVAPTPAAYPRAVGIPAKRPI 233
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_MACCJ (Ribosomal RNA small subunit methyltransferase G OS=Macrococcus caseolyticus (strain JCSC5402) GN=rsmG PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T GK +RE +DV ARAVA + +L+E CLPLV+ GG F+A KG + EV+ A+ ++G ++++ + R + K R+TPKKYPR GTP K PL Sbjct: 127 RAETFGKG-EYRESFDVVTARAVARLSVLSELCLPLVKKGGHFIALKGAQGEIEVEEGLFAISILGGAVVENHPLTLPEEESMRYILDIEKKRQTPKKYPRKPGTPNKEPL 236
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CHLAA (Ribosomal RNA small subunit methyltransferase G OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rsmG PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE--SQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +T+G++ + RE Y V ARAVAE+R+L EY LPL+R+GG +A KG P+ E+ ++ A+ L+G + VE + P R+ V+ K+ TP ++PR G PA+ PL Sbjct: 129 RIETVGQNPTEREHYQVVTARAVAELRVLLEYALPLLRLGGHLLAPKGRHPEVEIAAAQNALALLGGEVSACLPVEIPDEEP---RSLVIVTKTAPTPNRFPRAVGIPARRPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_THEPX (Ribosomal RNA small subunit methyltransferase G OS=Thermoanaerobacter sp. (strain X514) GN=rsmG PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +GKD+ +REQ+D++VARAVA + IL EY LP V+V G F+A KG + +EE++NS+RA++ + + ++ ++ V+ K P KYPR A + PL Sbjct: 130 RAEDIGKDIKYREQFDLSVARAVAPLNILLEYTLPFVKVDGYFIALKGREIEEEIENSQRALKELKGEIEEVKEIKLPYSDIVHHLVIIKKIDNCPTKYPRRANAIQRSPL 240
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DEIRA (Ribosomal RNA small subunit methyltransferase G OS=Deinococcus radiodurans GN=rsmG PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16 Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +TLG+ R YD VARAVA + +LAE LPL+RVGG+FVA KG +EE+ RA +G ++++ RT +V K R TP KYPR G P PL Sbjct: 134 RAETLGQSAEHRGSYDRVVARAVAALPVLAELALPLLRVGGVFVAQKGPLSEEELDAGRRAAGEVGGRIIEVDPFTLPVSGDARTLIVLEKQRPTPAKYPRREGVPTHQPL 244
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_SYNJB (Ribosomal RNA small subunit methyltransferase G OS=Synechococcus sp. GN=rsmG PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16 Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D R YD+A+ARA+A I AEYCLPL++VGG + +GH + E + E+A++L+G L+ + + + G R ++ K TP YPR GTP + PL Sbjct: 144 RAEIWGQDPQERGSYDIALARALASAEICAEYCLPLLKVGGRAILYRGHWTEAEAQTLEQALELLGGKLIHVEAFTTPRSRGVRHCLLLEKVAPTPPPYPRSPGTPKRQPL 254
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LEUMM (Ribosomal RNA small subunit methyltransferase G OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rsmG PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16 Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G++ +RE +D A ARAVA +LAEY LP V++GG F+ KG +E+ + ++A+ ++G + + P G QR + K +TPKKYPR AGTP+K P+ Sbjct: 129 RAEDIGQNPKYRENFDYATARAVARTSVLAEYTLPFVKIGGRFLVMKGSAAHQELLDGQKALAMLGGQVNE--EFVFTLPNGDQRYIQIVDKKTKTPKKYPRQAGTPSKKPI 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACPL (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus plantarum GN=rsmG PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16 Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 55 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 GK + RE YD+A ARAVA + +L+E CLPLV++GG +A K + E AVQ +G ++Q + R +V K + +PK+YPR GTPAK PL Sbjct: 135 GKKSAHRESYDIATARAVARLSVLSELCLPLVKIGGQMIALKAANASTETAEGTYAVQQLGGQIVQDEAFSLPVTADPRHIIVIDKKKPSPKRYPRKPGTPAKQPL 240
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_THEP3 (Ribosomal RNA small subunit methyltransferase G OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rsmG PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16 Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +GKD+ +REQ+D+++ARAVA + IL EY LP V+V G F+A KG + +EE++NS+RA++ + + ++ ++ V+ K P KYPR A + PL Sbjct: 130 RAEDIGKDIKYREQFDLSMARAVAPLNILLEYTLPFVKVDGYFIALKGREIEEEIENSQRALKELKGEIEEVKEIKLPYSDIVHHLVIIKKIDNCPTKYPRRANAIQRSPL 240
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CALS8 (Ribosomal RNA small subunit methyltransferase G OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rsmG PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16 Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + LGK+V FRE +D A ARAV ++ +L EY LPL+++GG F+A KG + ++E+++++ A+ ++G + ++ +R+ +V K R+TP ++PR K PL Sbjct: 142 RAEELGKEVEFRESFDFAFARAVDKLNVLCEYALPLLKIGGAFLAQKGFECEDELESAKNAIAMLGGEIEKIEKFTLPESDEKRSIIVIRKLRQTPIEFPRKTKQIIKKPL 252 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |