FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACBA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rsmG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   55 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            GK  + RE +D+  ARAVA M +L+E CLPLV+VGG FVA K    + E+  S++A+  +G  L    +         R  VV  K + TPK+YPR AGTP K PL
Sbjct:  135 GKRAANREGFDLVTARAVARMSVLSELCLPLVKVGGQFVALKAAQTENELAVSQKAITTLGGKLQADEAFNLPVSNDPRHIVVIDKVKTTPKRYPRKAGTPNKEPL 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_FINM2 (Ribosomal RNA small subunit methyltransferase G OS=Finegoldia magna (strain ATCC 29328) GN=rsmG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +   +REQYD  ++RAV+++  LAE+CLP V+VGG  +A KG   + +V   E A++++G  + Q  +++ +     R+ VV  K + TPKKYPR  G P K PL
Sbjct:  124 RAEECTRTAEYREQYDYCISRAVSKLDTLAEFCLPFVKVGGYMIAMKGKSDETDV--GENAIKILGGKIEQ--TIDYKIDDEDRSLVVIKKIKETPKKYPRGGGKPKKNPL 230          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_MOOTA (Ribosomal RNA small subunit methyltransferase G OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G+  ++RE +D+AV+R +A M  LAEYCLP VRVGG  +A KG   + E+  + RA++++G    ++           R  ++  K   TP  YPR  G PAK PL
Sbjct:  129 RAEDIGRQKNYRESFDLAVSRGLAGMNTLAEYCLPFVRVGGFMIAYKGPGGEGELNAAARAIEILGGGTKKVWRGSLTGGQEVRQLIIIQKEHPTPPVYPRRPGLPAKRPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBJ (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rsmG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 36/111 (32.43%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +++  R++YD+AV+RAVA + +L+E+C+P V  GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K R T K+YPR  G   K PL
Sbjct:  128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIMKIDIEDTDLKHNLVIIKKLRETGKRYPRKPGIIKKNPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOB6 (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rsmG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 36/111 (32.43%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +++  R++YD+AV+RAVA + +L+E+C+P V  GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K R T K+YPR  G   K PL
Sbjct:  128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIMKIDIEDTDLKHNLVIIKKVRETGKRYPRKPGIIKKNPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBM (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rsmG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 37/111 (33.33%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   ++   R++YDVAV+RAVA + +L+E+C+P V+ GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K + T KKYPR  G   K PL
Sbjct:  128 RAEDYAQEAEHRQKYDVAVSRAVANLAVLSEFCIPFVKKGGYFIAMKGPSVEEEITVATKSIEVLGGKIEDIIKIDIEDTDLKHNLVIIKKVKETEKKYPRKPGIIKKDPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACSS (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   70 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            +REQ+D+  ARAVA M +LAE+CLP V+VGG FVA K      E+  +  A++ +G  L +  +         R  V+  K + TP KYPR AG P K PL
Sbjct:  140 YREQFDMVTARAVAPMNVLAEFCLPAVKVGGQFVALKASQSDTELAEAAFAIETLGGQLKEDIAFNLPETNDPRHLVIIDKVQSTPDKYPRRAGVPVKKPL 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBL (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rsmG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +++  R++YD+AV+RAVA + +L+E+C+P V  GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K + T K+YPR  G   K PL
Sbjct:  128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238          

HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 QLLNVQIVRGRAE 41
            QL N+Q + GRAE
Sbjct:  118 QLKNIQCLHGRAE 130          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBK (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Okra / Type B1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +++  R++YD+AV+RAVA + +L+E+C+P V  GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K + T K+YPR  G   K PL
Sbjct:  128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238          

HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 QLLNVQIVRGRAE 41
            QL N+Q + GRAE
Sbjct:  118 QLKNIQCLHGRAE 130          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBH (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rsmG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +++  R++YD+AV+RAVA + +L+E+C+P V  GG F+A KG   +EE+  + ++++++G  +  +  ++ +    +   V+  K + T K+YPR  G   K PL
Sbjct:  128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238          

HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 QLLNVQIVRGRAE 41
            QL N+Q + GRAE
Sbjct:  118 QLKNIQCLHGRAE 130          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_LACBA3.979e-1644.34Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_FINM23.979e-1638.74Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_MOOTA5.196e-1637.84Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBJ5.196e-1632.43Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOB65.196e-1632.43Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBM6.787e-1633.33Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACSS8.864e-1642.57Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBL1.150e-1531.53Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBK1.150e-1531.53Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOBH1.150e-1531.53Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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