FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACBA (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rsmG PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16 Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 55 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 GK + RE +D+ ARAVA M +L+E CLPLV+VGG FVA K + E+ S++A+ +G L + R VV K + TPK+YPR AGTP K PL Sbjct: 135 GKRAANREGFDLVTARAVARMSVLSELCLPLVKVGGQFVALKAAQTENELAVSQKAITTLGGKLQADEAFNLPVSNDPRHIVVIDKVKTTPKRYPRKAGTPNKEPL 240
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_FINM2 (Ribosomal RNA small subunit methyltransferase G OS=Finegoldia magna (strain ATCC 29328) GN=rsmG PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16 Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + + +REQYD ++RAV+++ LAE+CLP V+VGG +A KG + +V E A++++G + Q +++ + R+ VV K + TPKKYPR G P K PL Sbjct: 124 RAEECTRTAEYREQYDYCISRAVSKLDTLAEFCLPFVKVGGYMIAMKGKSDETDV--GENAIKILGGKIEQ--TIDYKIDDEDRSLVVIKKIKETPKKYPRGGGKPKKNPL 230
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_MOOTA (Ribosomal RNA small subunit methyltransferase G OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmG PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16 Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +G+ ++RE +D+AV+R +A M LAEYCLP VRVGG +A KG + E+ + RA++++G ++ R ++ K TP YPR G PAK PL Sbjct: 129 RAEDIGRQKNYRESFDLAVSRGLAGMNTLAEYCLPFVRVGGFMIAYKGPGGEGELNAAARAIEILGGGTKKVWRGSLTGGQEVRQLIIIQKEHPTPPVYPRRPGLPAKRPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBJ (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rsmG PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16 Identity = 36/111 (32.43%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +++ R++YD+AV+RAVA + +L+E+C+P V GG F+A KG +EE+ + ++++++G + + ++ + + V+ K R T K+YPR G K PL Sbjct: 128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIMKIDIEDTDLKHNLVIIKKLRETGKRYPRKPGIIKKNPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOB6 (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rsmG PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16 Identity = 36/111 (32.43%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +++ R++YD+AV+RAVA + +L+E+C+P V GG F+A KG +EE+ + ++++++G + + ++ + + V+ K R T K+YPR G K PL Sbjct: 128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIMKIDIEDTDLKHNLVIIKKVRETGKRYPRKPGIIKKNPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBM (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rsmG PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16 Identity = 37/111 (33.33%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + ++ R++YDVAV+RAVA + +L+E+C+P V+ GG F+A KG +EE+ + ++++++G + + ++ + + V+ K + T KKYPR G K PL Sbjct: 128 RAEDYAQEAEHRQKYDVAVSRAVANLAVLSEFCIPFVKKGGYFIAMKGPSVEEEITVATKSIEVLGGKIEDIIKIDIEDTDLKHNLVIIKKVKETEKKYPRKPGIIKKDPL 238
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACSS (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmG PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16 Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 70 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 +REQ+D+ ARAVA M +LAE+CLP V+VGG FVA K E+ + A++ +G L + + R V+ K + TP KYPR AG P K PL Sbjct: 140 YREQFDMVTARAVAPMNVLAEFCLPAVKVGGQFVALKASQSDTELAEAAFAIETLGGQLKEDIAFNLPETNDPRHLVIIDKVQSTPDKYPRRAGVPVKKPL 240
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBL (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rsmG PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +++ R++YD+AV+RAVA + +L+E+C+P V GG F+A KG +EE+ + ++++++G + + ++ + + V+ K + T K+YPR G K PL Sbjct: 128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238 HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15 Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 3 QLLNVQIVRGRAE 41 QL N+Q + GRAE Sbjct: 118 QLKNIQCLHGRAE 130
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBK (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Okra / Type B1) GN=rsmG PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +++ R++YD+AV+RAVA + +L+E+C+P V GG F+A KG +EE+ + ++++++G + + ++ + + V+ K + T K+YPR G K PL Sbjct: 128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238 HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15 Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 3 QLLNVQIVRGRAE 41 QL N+Q + GRAE Sbjct: 118 QLKNIQCLHGRAE 130
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOBH (Ribosomal RNA small subunit methyltransferase G OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rsmG PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 35/111 (31.53%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + +++ R++YD+AV+RAVA + +L+E+C+P V GG F+A KG +EE+ + ++++++G + + ++ + + V+ K + T K+YPR G K PL Sbjct: 128 RAEDYAQEIQHRQKYDIAVSRAVANLAVLSEFCIPFVEKGGYFIAMKGPSVEEEITAATKSIEILGGKIEDIIKIDIEDTDLKHNLVIIKKVKETGKRYPRKPGIIKKNPL 238 HSP 2 Score: 20.4014 bits (41), Expect = 1.150e-15 Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 3 QLLNVQIVRGRAE 41 QL N+Q + GRAE Sbjct: 118 QLKNIQCLHGRAE 130 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |