FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACCR (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 131          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACC1 (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 10987) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACAN (30S ribosomal protein S5 OS=Bacillus anthracis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACAH (30S ribosomal protein S5 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 131          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ANATD (30S ribosomal protein S5 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            G  LK+ V+ I  V K  + G+R +F A VVVGD +GHVG G   + E+  AIR AI  AK  +I V        +G   T+P +  G  G+  V + PAP G G++A    + V + AGI D+ T S GS
Sbjct:   10 GLDLKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGS 132          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PROA2 (30S ribosomal protein S5 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   +   K +V+  P+ +G          T+P +V  K GS  V M PA  G G++A    + VL+ AGI D+ T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGVEDGKKNVVKVPIVKG----------TIPHQVVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLL2 (30S ribosomal protein S5 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   +   K +VI  P+ +G          T+P +V  K GS  V M PA  G G++A    + VL+ AG+ DV T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDREGHVGYGLGKANEVQDAIAKGVEDGKKNVIKVPIVKG----------TIPHQVIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVHDVLTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RR5_EMIHU (30S ribosomal protein S5, chloroplastic OS=Emiliania huxleyi GN=rps5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 716
            ++ V+ +  V K  + G++  F+A VVVGD  G VG+GV  + +V+TA+R  +   K +VI V        +   +++P K+ G+ G+  + + P+  G G++A   P+ VL+ AGI ++ +   GS   L N
Sbjct:   18 EERVVSVQRVTKVVKGGKKLSFRAVVVVGDQQGKVGVGVGKASDVSTAVRKGVTDGKKNVITV-------PLTSSNSIPHKINGRFGAAKLVLRPSAPGCGVIAGGAPRIVLELAGIKNILSKQLGSNSLLNN 143          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LEPBL (30S ribosomal protein S5 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rpsE1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  321 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            ++V+KI  V K  + G+R  F A  VVGD  G VG+G   + EV  AIR +I  AK  ++ +          + HT+P +V GK  S  V + P+  G GI+A    + +++ AGI DV T S GS+  + N VK  L
Sbjct:   13 EKVVKIDRVAKVVKGGRRFSFNALSVVGDQKGKVGIGFGKANEVPDAIRKSIEAAKKHLVKINF--------KGHTIPHEVVGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSSNPV-NIVKATL 141          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_BACCZ1.131e-1438.7630S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACCR1.131e-1438.7630S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACC11.131e-1438.7630S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACAN1.131e-1438.7630S ribosomal protein S5 OS=Bacillus anthracis GN=... [more]
RS5_BACAH1.131e-1438.7630S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_ANATD1.131e-1439.6930S ribosomal protein S5 OS=Anaerocellum thermophi... [more]
RS5_PROA21.478e-1437.4030S ribosomal protein S5 OS=Prosthecochloris aestu... [more]
RS5_CHLL21.478e-1438.1730S ribosomal protein S5 OS=Chlorobium limicola (s... [more]
RR5_EMIHU1.478e-1431.5830S ribosomal protein S5, chloroplastic OS=Emilian... [more]
RS5_LEPBL1.930e-1436.9630S ribosomal protein S5 OS=Leptospira borgpeterse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
back to top