FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEAB (30S ribosomal protein S5 OS=Thermosipho africanus (strain TCF52B) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 3 Query: 318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 ++ +++I K T+ G+ F+ VVG+ +G VG+GV ++EV AIR A+ A+ +V +P+ G T+P ++ G+ + V + PA G GI++ + V++ AGI ++ T + GST Sbjct: 16 EERIVEIRRTTKVTKGGKNLSFRVLAVVGNRNGKVGVGVGKAREVPDAIRKALSAARRNVFEVPIYNG----------TIPHEIVGRQDAAKVLLKPAAPGTGIISNGTVRAVVELAGIHNILTKTSGST 135
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STRGG (30S ribosomal protein S5 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3 Query: 321 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 710 + V+ I V K + G+R F A VVVGD DG VG+G +KEV AI + AK + V R T+P +TG+ + V + PA G G++A + VL+ AG+ D+ + S GS+ + Sbjct: 36 ERVVAINRVAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKNFFKVPR--------IQGTIPHPITGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDILSKSLGSSNAI 157
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALSO (30S ribosomal protein S5 OS=Ralstonia solanacearum GN=rpsE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA--KLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A K+ +P++ G T+ +V GK G+ V M PA G G++A + + + G+ ++ T S GST N V+ L Sbjct: 17 LREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVPLKNG----------TLQHEVIGKHGAAKVLMAPAKEGTGVIAGGPMRAIFEVMGVTNIVTKSHGSTNPY-NMVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_POLNA (30S ribosomal protein S5 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 LK++++ I V K + G+ F A VVGD DG VG+G SKEV A++ A+ A+ ++ V + T+ V G G+ V M PAP+G GI+A + V + GI D+ S GS+ Sbjct: 17 LKEKMIAINRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKSKEVPAAVQKAMEEARRNMTKVSL--------KNGTLHHNVFGHHGAANVMMAPAPKGTGIIAGGPMRAVFEVMGITDIVAKSHGSS 137
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_DEHE1 (30S ribosomal protein S5 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 3 Query: 312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 +L D+++ I V K + G+R F A VV GD HVG+GV +KEV +AI A AK ++ + + TVP ++ K G+ V + PA G GI+A + VL+ GI D+ T S G + N K L Sbjct: 14 ELNDKLIFINRVTKVVKGGKRMGFAALVVTGDGKNHVGIGVGKAKEVPSAISKASANAKRNLSRI--------LLNGTTVPHEIVFKYGAAQVLLKPAAPGTGIIAGGSVRAVLESTGIKDILTKSMGCSNK-ANVAKATL 145
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALEJ (30S ribosomal protein S5 OS=Ralstonia eutropha (strain JMP134) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ V + T+ +V GK G+ V M+PA G G++A + + + G+ +V T S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALEH (30S ribosomal protein S5 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ V + T+ +V GK G+ V M+PA G G++A + + + G+ +V T S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_DELAS (30S ribosomal protein S5 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPH-TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 L+++++ + V K + G+ F A VVGD DG VG+G SKEV A++ A+ ++ ++I K+ H T+ V G+ G+ +V + PAP+G GI+A + V + GI D+ S GS+ Sbjct: 17 LREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKSKEVPAAVQKAMEESRRNMI---------KVSLKHGTIHHTVMGQHGAASVMLNPAPKGTGIIAGGPMRAVFEVLGITDIVAKSHGSS 137
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CUPTR (30S ribosomal protein S5 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ V + T+ +V GK G+ V M+PA G G++A + + + G+ +V T S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ACIF5 (30S ribosomal protein S5 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 294 DTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 710 DT ++++++ I V K + G++ F A +VVGD DG VG G +KEV I+ A A+ ++ IP+ RG T+P V G+ G+ V + PAP G+G++A + V + G+ +V S GS + Sbjct: 7 DTQPNDGMQEKLIHINRVSKVVKGGRQFGFAALMVVGDGDGKVGFGRGKAKEVPAGIQKATDQARRWMTSIPLMRG---------GTIPYPVEGRHGAARVMLRPAPEGSGVIAGGAMRAVCEAVGLRNVVAKSLGSNNPI 138 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |