FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEAB (30S ribosomal protein S5 OS=Thermosipho africanus (strain TCF52B) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            ++ +++I    K T+ G+   F+   VVG+ +G VG+GV  ++EV  AIR A+  A+ +V  +P+  G          T+P ++ G+  +  V + PA  G GI++    + V++ AGI ++ T + GST
Sbjct:   16 EERIVEIRRTTKVTKGGKNLSFRVLAVVGNRNGKVGVGVGKAREVPDAIRKALSAARRNVFEVPIYNG----------TIPHEIVGRQDAAKVLLKPAAPGTGIISNGTVRAVVELAGIHNILTKTSGST 135          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STRGG (30S ribosomal protein S5 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  321 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 710
            + V+ I  V K  + G+R  F A VVVGD DG VG+G   +KEV  AI   +  AK +   V R           T+P  +TG+  +  V + PA  G G++A    + VL+ AG+ D+ + S GS+  +
Sbjct:   36 ERVVAINRVAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKNFFKVPR--------IQGTIPHPITGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDILSKSLGSSNAI 157          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALSO (30S ribosomal protein S5 OS=Ralstonia solanacearum GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA--KLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A  K+  +P++ G          T+  +V GK G+  V M PA  G G++A    + + +  G+ ++ T S GST    N V+  L
Sbjct:   17 LREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVPLKNG----------TLQHEVIGKHGAAKVLMAPAKEGTGVIAGGPMRAIFEVMGVTNIVTKSHGSTNPY-NMVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_POLNA (30S ribosomal protein S5 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I  V K  + G+   F A  VVGD DG VG+G   SKEV  A++ A+  A+ ++  V          +  T+   V G  G+  V M PAP+G GI+A    + V +  GI D+   S GS+
Sbjct:   17 LKEKMIAINRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKSKEVPAAVQKAMEEARRNMTKVSL--------KNGTLHHNVFGHHGAANVMMAPAPKGTGIIAGGPMRAVFEVMGITDIVAKSHGSS 137          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_DEHE1 (30S ribosomal protein S5 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L D+++ I  V K  + G+R  F A VV GD   HVG+GV  +KEV +AI  A   AK ++  +        +    TVP ++  K G+  V + PA  G GI+A    + VL+  GI D+ T S G +    N  K  L
Sbjct:   14 ELNDKLIFINRVTKVVKGGKRMGFAALVVTGDGKNHVGIGVGKAKEVPSAISKASANAKRNLSRI--------LLNGTTVPHEIVFKYGAAQVLLKPAAPGTGIIAGGSVRAVLESTGIKDILTKSMGCSNK-ANVAKATL 145          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALEJ (30S ribosomal protein S5 OS=Ralstonia eutropha (strain JMP134) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+  ++ V          +  T+  +V GK G+  V M+PA  G G++A    + + +  G+ +V T S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_RALEH (30S ribosomal protein S5 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+  ++ V          +  T+  +V GK G+  V M+PA  G G++A    + + +  G+ +V T S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_DELAS (30S ribosomal protein S5 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPH-TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            L+++++ +  V K  + G+   F A  VVGD DG VG+G   SKEV  A++ A+  ++ ++I         K+   H T+   V G+ G+ +V + PAP+G GI+A    + V +  GI D+   S GS+
Sbjct:   17 LREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKSKEVPAAVQKAMEESRRNMI---------KVSLKHGTIHHTVMGQHGAASVMLNPAPKGTGIIAGGPMRAVFEVLGITDIVAKSHGSS 137          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CUPTR (30S ribosomal protein S5 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+  ++ V          +  T+  +V GK G+  V M+PA  G G++A    + + +  G+ +V T S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMDEARRKMVKVSL--------KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPY-NMVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ACIF5 (30S ribosomal protein S5 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  294 DTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 710
            DT     ++++++ I  V K  + G++  F A +VVGD DG VG G   +KEV   I+ A   A+  ++ IP+ RG          T+P  V G+ G+  V + PAP G+G++A    + V +  G+ +V   S GS   +
Sbjct:    7 DTQPNDGMQEKLIHINRVSKVVKGGRQFGFAALMVVGDGDGKVGFGRGKAKEVPAGIQKATDQARRWMTSIPLMRG---------GTIPYPVEGRHGAARVMLRPAPEGSGVIAGGAMRAVCEAVGLRNVVAKSLGSNNPI 138          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_THEAB8.964e-1230.7730S ribosomal protein S5 OS=Thermosipho africanus ... [more]
RS5_STRGG8.964e-1234.6230S ribosomal protein S5 OS=Streptomyces griseus s... [more]
RS5_RALSO8.964e-1230.9930S ribosomal protein S5 OS=Ralstonia solanacearum... [more]
RS5_POLNA8.964e-1234.8830S ribosomal protein S5 OS=Polaromonas naphthalen... [more]
RS5_DEHE18.964e-1234.7530S ribosomal protein S5 OS=Dehalococcoides etheno... [more]
RS5_RALEJ1.171e-1130.7130S ribosomal protein S5 OS=Ralstonia eutropha (st... [more]
RS5_RALEH1.171e-1130.7130S ribosomal protein S5 OS=Ralstonia eutropha (st... [more]
RS5_DELAS1.171e-1133.0830S ribosomal protein S5 OS=Delftia acidovorans (s... [more]
RS5_CUPTR1.171e-1130.7130S ribosomal protein S5 OS=Cupriavidus taiwanensi... [more]
RS5_ACIF51.171e-1131.9130S ribosomal protein S5 OS=Acidithiobacillus ferr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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