FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+P T+LGRLV EG++ + E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ + RG   W    G+ HTVP KV+G  GSV + ++PAPRG G+ A  V KKV++ AGI DV+T + GST+T  NF K
Sbjct:    9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAK 189          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            W P T++GRLV+EGKI+S+++I+  +LPI E +I+D L+   L  EV+ +  VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVRRG   W    G  H+VP  V GK GSV V + PAP+G G+VA  V K VL+ AGI DV+T ++G T+T  NF +
Sbjct:   14 WQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFAR 193          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.043e-39
Identity = 83/181 (45.86%), Postives = 126/181 (69.61%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            WVP TKLGRLV +GKI+++++    +LP+KE +I+D L+   L+D+V++I  VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +VA AI+ AI  AKL++  V+RG   W    G  H++P KVTG  GSV V ++P P+G GIVA  V K+V++ AG+ DV++ ++G TKT  NF K
Sbjct:    5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAK 184          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.467e-38
Identity = 84/182 (46.15%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W P T+LGRLV+EG I S+++I+    PI E +IID L+   L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++ AGIDDV++ +RG T+T  NF +
Sbjct:    9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFAR 189          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.916e-38
Identity = 85/182 (46.70%), Postives = 124/182 (68.13%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W P TK+G+LV+EGKI S+++I+  + PI E +I+D L+  KLK EVM I  VQKQT AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPVRRG   W    G  H++P KV GK GSV V ++PAP+G G+V     K +L +AGI D ++ +RGST T  NF+K
Sbjct:   12 EWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIK 192          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.916e-38
Identity = 87/181 (48.07%), Postives = 125/181 (69.06%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFV 722
            +W P TK+G+LV+EGKI S++++Y  ++ I E +IID L+ + +K EV+ I  VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVRRG   W    G  H++P  V+GK GS  V + PAP+G G+VA  V K +L +AGI DV++ SRG T+T  NF+
Sbjct:   12 EWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFI 191          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.282e-38
Identity = 84/182 (46.15%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +WVP T+LG+LV +G++ S+++     LPI+E +I+D L+  +L+DEV+ I  VQ+ T +G+R +F+A V+VG+ DG VGLG     +V  AIR AI  AK+++  ++RG   W    G PHTVP +V GK GSVTV + PAPRG G+ A    +KVL+ AG+ DV+T + G T+T  NF K
Sbjct:    8 EWVPQTRLGKLVFDGQVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAK 188          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.622e-37
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            WVP T++G++V EGKI SL++I+  +LP+ E +I+D L+   LK E + +  VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG   W  + G PH++P  V GK GSV V + PAP+G G+VA    K VL+ AGI DV+T + G TKT  NF K
Sbjct:   14 WVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAK 193          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.767e-37
Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            +WVP T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + LKDEV+ I   Q+ T +G+R  +   VVVG+ DG+VGLG+  SKE A AIR A+I AKL+++ +RR  G W    GR HT+P  V GK GSV + + PAPRG G+    V + +L  AGI+D +  + G TKT  N+
Sbjct:    4 EWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNY 182          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37
Identity = 80/180 (44.44%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            +W P T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + +KDEV+ I   Q+ T +G+R  +   VVVG+ DG++GLG+  SKE A AIR A+I AKL+++ +RR  G W    GR HT+P  V GK GSV + + PAPRG G+    V K +L+ AGI+D +  + G TKT  N+
Sbjct:    4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILRMAGIEDAWGFAAGHTKTTVNY 182          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_METTP3.861e-3946.7030S ribosomal protein S5P OS=Methanosaeta thermoph... [more]
RS5_AERPE3.861e-3949.7230S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_ARCFU5.043e-3945.8630S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]
RS5_METTH1.467e-3846.1530S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_SULTO1.916e-3846.7030S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_METS51.916e-3848.0730S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_METBU7.282e-3846.1530S ribosomal protein S5P OS=Methanococcoides burt... [more]
RS5_STAMF1.622e-3747.5130S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_THEAC2.767e-3745.5630S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_THEVO4.720e-3744.4430S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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