FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCH (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ +P++ G T+ +V GK G+ V + PA G G++A + V G+ +V S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCC (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ +P++ G T+ +V GK G+ V + PA G G++A + V G+ +V S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCA (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ +P++ G T+ +V GK G+ V + PA G G++A + V G+ +V S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURA4 (30S ribosomal protein S5 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + V K + G+ F A VVGD DG +G+G +KEV A++ A+ A+ ++ +P++ G T+ +V GK G+ V + PA G G++A + V G+ +V S GST N V+ L Sbjct: 17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BUCBP (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsE PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL*VVVEDIWLP 764 LK++++ + V K + G+ F A VVGD G VG G ++EV +AI+ A+ A+ ++I P+ G T+ VTG + M PA G GI+A + VL+ AG+ +V + GST + N V+ + +V+E + P Sbjct: 12 LKEKLISVNRVSKTVKGGRIFSFSALTVVGDGHGKVGFGYGKAREVPSAIQKAMEKARRNMIQVPLNNG----------TLQYSVTGSYTGSYIFMKPASNGTGIIAGGAMRSVLEVAGVHNVLAKTYGSTNPI-NVVRATM-LVLESMKSP 151
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLO (30S ribosomal protein S5 OS=Bifidobacterium longum GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3 Query: 306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 G +L D V+ I V K + G+ F A VVVGD +G VG+G S+EV AI + AK + +P RG T+ V G + TV + PA G G++A + V++ AGI DV T S GS T N V+ + Sbjct: 42 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 175
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLI (30S ribosomal protein S5 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3 Query: 306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 G +L D V+ I V K + G+ F A VVVGD +G VG+G S+EV AI + AK + +P RG T+ V G + TV + PA G G++A + V++ AGI DV T S GS T N V+ + Sbjct: 52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 185
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLD (30S ribosomal protein S5 OS=Bifidobacterium longum (strain DJO10A) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3 Query: 306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 G +L D V+ I V K + G+ F A VVVGD +G VG+G S+EV AI + AK + +P RG T+ V G + TV + PA G G++A + V++ AGI DV T S GS T N V+ + Sbjct: 52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 185
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BDEBA (30S ribosomal protein S5 OS=Bdellovibrio bacteriovorus GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 3 Query: 312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 +L++ V+ I V K + G+R F A VVVG+ G VG G + EV AI A AK S V K GR T+P +V GK G+ V M PA G G++A + VL+ G+ D+ T G T+ N V+ + Sbjct: 10 ELEERVVAINRVTKVVKGGRRFSFAALVVVGNKAGDVGFGSGKAGEVPEAIGKASRSAKKSAKSVAL-----KEGR--TIPHEVIGKFGAAKVIMKPAAPGTGVIAGGAVRAVLESVGVKDILTKCVG-TRNPHNAVRATI 142 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |