FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCH (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+  V + PA  G G++A    + V    G+ +V   S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCC (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+  V + PA  G G++A    + V    G+ +V   S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURCA (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+  V + PA  G G++A    + V    G+ +V   S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BURA4 (30S ribosomal protein S5 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+  V + PA  G G++A    + V    G+ +V   S GST    N V+  L
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATL 147          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BUCBP (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL*VVVEDIWLP 764
            LK++++ +  V K  + G+   F A  VVGD  G VG G   ++EV +AI+ A+  A+ ++I  P+  G          T+   VTG      + M PA  G GI+A    + VL+ AG+ +V   + GST  + N V+  + +V+E +  P
Sbjct:   12 LKEKLISVNRVSKTVKGGRIFSFSALTVVGDGHGKVGFGYGKAREVPSAIQKAMEKARRNMIQVPLNNG----------TLQYSVTGSYTGSYIFMKPASNGTGIIAGGAMRSVLEVAGVHNVLAKTYGSTNPI-NVVRATM-LVLESMKSP 151          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLO (30S ribosomal protein S5 OS=Bifidobacterium longum GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            G +L D V+ I  V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+  +
Sbjct:   42 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 175          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLI (30S ribosomal protein S5 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            G +L D V+ I  V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+  +
Sbjct:   52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 185          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BIFLD (30S ribosomal protein S5 OS=Bifidobacterium longum (strain DJO10A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            G +L D V+ I  V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+  +
Sbjct:   52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATV 185          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BDEBA (30S ribosomal protein S5 OS=Bdellovibrio bacteriovorus GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ V+ I  V K  + G+R  F A VVVG+  G VG G   + EV  AI  A   AK S   V       K GR  T+P +V GK G+  V M PA  G G++A    + VL+  G+ D+ T   G T+   N V+  +
Sbjct:   10 ELEERVVAINRVTKVVKGGRRFSFAALVVVGNKAGDVGFGSGKAGEVPEAIGKASRSAKKSAKSVAL-----KEGR--TIPHEVIGKFGAAKVIMKPAAPGTGVIAGGAVRAVLESVGVKDILTKCVG-TRNPHNAVRATI 142          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_BURCH9.911e-1130.2830S ribosomal protein S5 OS=Burkholderia cenocepac... [more]
RS5_BURCC9.911e-1130.2830S ribosomal protein S5 OS=Burkholderia cenocepac... [more]
RS5_BURCA9.911e-1130.2830S ribosomal protein S5 OS=Burkholderia cenocepac... [more]
RS5_BURA49.911e-1130.2830S ribosomal protein S5 OS=Burkholderia ambifaria... [more]
RS5_BUCBP9.911e-1131.5830S ribosomal protein S5 OS=Buchnera aphidicola su... [more]
RS5_BIFLO9.911e-1135.8630S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLI9.911e-1135.8630S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLD9.911e-1135.8630S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BDEBA9.911e-1136.1730S ribosomal protein S5 OS=Bdellovibrio bacteriov... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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