FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37 Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 +W P TK+G+LV+EG I +++I+ LPI E +I+D L+ L++EVM + VQ+ ++G++ F+ V VG+ +G+VGLG +KEV AIR A+ AK ++I VRRG WG G+ HTVP KV GK SV+V ++PAP G G+V V K +L AGI DV++ S G T+T NF Sbjct: 7 EWEPKTKMGKLVKEGTITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDVGKTILNLAGIKDVWSQSFGQTQTTVNF 185
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37 Identity = 80/182 (43.96%), Postives = 120/182 (65.93%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +WVP+T LGR+V+ G+I+S+++I PIKE +I+D + L DEV+ I VQ+ T +G+R +F+A VVVG+ DG++G G +V AI+ AI+ AK++++ VRRG W PH++P VTG GSV V + PAP+G G+V + KKVL+ AGI DV+ ++G T+T N+ K Sbjct: 7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINYAK 187
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37 Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W P TKLG +V+EG+I + +I+ IKE +IID L + + EV+ I + T +G+R RF+ VG+ DG+VGLG+ KEV AIR AI AKL++I ++RG W + RPH+VP V GK GSV VR++P PRG G+V V KK+L+ AG+ DV++ + G T+T NF K Sbjct: 15 EWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAK 199
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37 Identity = 82/182 (45.05%), Postives = 119/182 (65.38%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W+P+T LGR+V G+I S++++ PIKE QI+D L+ L+DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VG G +V AI+ AI+ AKL++I V RG W H++P +VTGK GSV V + PAP+G G+V +PKKVL AGI DV+ +RG T+T N+ K Sbjct: 7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAK 187
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36 Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 W+P T+LG++V EGKI ++E+ + LPIKEYQI+D L+ L DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VGL +V AIR AI AKL++I V RG W G HTVP +V G+ GS+ V ++PAPRG G+ A KKVL+ AG DV++ + G T+T NF Sbjct: 12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINF 189
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36 Identity = 79/181 (43.65%), Postives = 123/181 (67.96%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 W P TK+G+L++EGKI S+++++ +LPI E +I+D L+ KL+ +++ I VQKQT AG+ +R+K +V+G+ DG++ G +K++ AI+ AI AK+ +IPVRRG W G H++P V+GK GSV V ++PAP+G G+V V K L AG+ DV++ ++GST T NF+K Sbjct: 13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIK 192
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36 Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W P TKLG LV+EG+I + +I+ IKE +IID L + + E++ I + T +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AKL++I ++RG W + RPH+VP V GK GSV VR++P PRG G+V V KK+L+ AGI DV++ + G T+T NF K Sbjct: 15 EWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAK 199
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36 Identity = 81/180 (45.00%), Postives = 121/180 (67.22%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 +W P T +GR+V+EG+I ++ I ++LPI E +I+D L+ L+++V+ + VQ+ ++G+R RF+A VVVG+ +G+VG+G +KEV AIR AI AK ++I V+RG W G PH++P K GKCGS + ++PAP+G G+VA V K VL AGI DV+T + G T+T NF Sbjct: 7 EWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNF 185
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36 Identity = 81/185 (43.78%), Postives = 116/185 (62.70%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W P TKLG LV+EG+I + +I+ IKE +IID L + + E++ I + T +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AKL++I ++RG W + RPH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T NF K Sbjct: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAK 199
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.343e-36 Identity = 81/181 (44.75%), Postives = 118/181 (65.19%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 W P T++GR+V+EG I + I LP+ E +I+D L+ L+++V+ + VQ+ ++G+R R++A VVVG+ +G+VG+G+ SKEV AIR AI AKLS+I VR G W G PH++P G CGSV V ++PAPRG G+VA V K VL AG+ D +T++ G T+T NF + Sbjct: 16 WEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAE 195 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |