FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37
Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            +W P TK+G+LV+EG I  +++I+   LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   +KEV  AIR A+  AK ++I VRRG   WG   G+ HTVP KV GK  SV+V ++PAP G G+V   V K +L  AGI DV++ S G T+T  NF
Sbjct:    7 EWEPKTKMGKLVKEGTITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDVGKTILNLAGIKDVWSQSFGQTQTTVNF 185          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37
Identity = 80/182 (43.96%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRRG   W      PH++P  VTG  GSV V + PAP+G G+V   + KKVL+ AGI DV+  ++G T+T  N+ K
Sbjct:    7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINYAK 187          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37
Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W P TKLG +V+EG+I  + +I+     IKE +IID L   +  +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+ AG+ DV++ + G T+T  NF K
Sbjct:   15 EWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAK 199          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37
Identity = 82/182 (45.05%), Postives = 119/182 (65.38%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+P+T LGR+V  G+I S++++     PIKE QI+D L+   L+DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V RG   W       H++P +VTGK GSV V + PAP+G G+V   +PKKVL  AGI DV+  +RG T+T  N+ K
Sbjct:    7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAK 187          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAPRG G+ A    KKVL+ AG  DV++ + G T+T  NF
Sbjct:   12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINF 189          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 79/181 (43.65%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++ I  VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG   W    G  H++P  V+GK GSV V ++PAP+G G+V   V K  L  AG+ DV++ ++GST T  NF+K
Sbjct:   13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIK 192          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+ AGI DV++ + G T+T  NF K
Sbjct:   15 EWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAK 199          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 81/180 (45.00%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            +W P T +GR+V+EG+I  ++ I  ++LPI E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V K VL  AGI DV+T + G T+T  NF
Sbjct:    7 EWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNF 185          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 81/185 (43.78%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV V+++P PRG G+V   V KK+L+ AGI DV++ + G T+T  NF K
Sbjct:   15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAK 199          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.343e-36
Identity = 81/181 (44.75%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T++ G T+T  NF +
Sbjct:   16 WEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAE 195          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_METS34.720e-3745.5630S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_METHJ4.720e-3743.9630S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_PYRFU6.165e-3744.3230S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_METMJ6.165e-3745.0530S ribosomal protein S5P OS=Methanoculleus marisn... [more]
RS5_UNCMA1.052e-3646.9330S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_SULAC1.373e-3643.6530S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_PYRHO1.373e-3644.3230S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_METJA1.373e-3645.0030S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_PYRAB1.794e-3643.7830S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_METVS2.343e-3644.7530S ribosomal protein S5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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