FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35 Identity = 80/179 (44.69%), Postives = 115/179 (64.25%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 W P T++G+ V+EG I ++ I + LP+ E +I+D L+ L+++V+ + VQ+ ++G+R RF+A VVG+ +G VG+G+ SKEV AIR AI AKLS+I VR G W G H++P G CGSV V ++PAPRG G+VA V K VL AGI D++T + G T+T NF Sbjct: 13 WEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNF 190
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35 Identity = 79/179 (44.13%), Postives = 113/179 (63.13%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 W P T+LGR V++G+I ++QI LPI E +I+D L+ L++EVM + VQ+ ++G++ F+ V VG+ +G+VGLG S+EV AIR A+ AK ++I VRRG WG GR HTVP K+ GK SV+ ++PAP G G+ V K +L AGI DV++ G T+T NF Sbjct: 22 WEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINF 199
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.421e-33 Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W PVT LG+ V G+I+S++Q+ PIKE +I+D + L+DEV+ I +Q+ T +G+R +F+A V+VG+ +G++G G +V AI+ AI AK++++ VRRG W H++P +V G GSV V + PAP+G G+V + KKVL+ AGI D +T +RG T+T NF K Sbjct: 7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAK 187
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32 Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFV 722 +W P TKLGRLV+EGKI ++++I + I+E +I+D L+ + L+ E MK + QK+T G +TR++ +VGD DGHVG+G+ S ++ A AI AKL++I V RG W G PH++P +V GK GSV V + PAP+G GIVA KK+ + AGI DV+ S G TKT N V Sbjct: 6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHV 198
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31 Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 W P T+LGR V +G+I S++ LP+KE +++D L+ L+DEV+ I VQ+ T +G+R +F+ VV+G+ DG+VG +V AI+ AI +AKL++I P+ G W ++ G +++ + TGK GSV V + PAPRG G+ AA + VL+ AG++D +T G+T+T N K Sbjct: 5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAK 184
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31 Identity = 71/181 (39.23%), Postives = 113/181 (62.43%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 W P T+LGR+V++G + S+EQ LP+KE +++D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ +G +G +V +AI+ AI +AKL++I V RG W + G +++ GK GSVTV ++PAP+G G+ AA +L+ AG++D +T S G+T+T N K Sbjct: 11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAK 190
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29 Identity = 76/184 (41.30%), Postives = 112/184 (60.87%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 WVP T LG+ V G+I SLE+I I+E II L+ LK EV+ + +QK T GQ TRFKA V G+ +G++G+G +K++ AI A A L+V P++ G W + + H+VP KV GK GSV + ++PAPRG G+VA +++L+ AG+ D +T+++GST T + K L Sbjct: 27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVL 209
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+D V+ I V K + G+R RF A V+VGD +GHVG G ++EV AIR A+ AK ++I V K+G T+P +V G+ G+ V + PA G+GI A + V++ AGIDDV + + GS KT N ++ + Sbjct: 11 LEDRVVSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS-KTAINVIRATI 141
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15 Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 LK++V+ I V K + G+ RF A VVVGD +GHVG+G S E+ AIR I AK +++ V + +G TVP ++ GK G+ V ++PA G G++A + VL+ AG+ DV S GS N VK + Sbjct: 10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATI 140
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15 Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 LK++V+ I V K + G+ RF A VVVGD +GHVG+G S E+ AIR I AK +++ V + +G TVP ++ GK G+ V ++PA G G++A + VL+ AG+ DV S GS N VK + Sbjct: 10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATI 140 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |