FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 80/179 (44.69%), Postives = 115/179 (64.25%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G  H++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D++T + G T+T  NF
Sbjct:   13 WEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNF 190          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35
Identity = 79/179 (44.13%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719
            W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++PAP G G+    V K +L  AGI DV++   G T+T  NF
Sbjct:   22 WEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINF 199          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.421e-33
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W PVT LG+ V  G+I+S++Q+     PIKE +I+D  +   L+DEV+ I  +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VRRG   W       H++P +V G  GSV V + PAP+G G+V   + KKVL+ AGI D +T +RG T+T  NF K
Sbjct:    7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAK 187          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32
Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFV 722
            +W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V RG   W    G PH++P +V GK GSV V + PAP+G GIVA    KK+ + AGI DV+  S G TKT  N V
Sbjct:    6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHV 198          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + PAPRG G+ AA   + VL+ AG++D +T   G+T+T  N  K
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAK 184          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 71/181 (39.23%), Postives = 113/181 (62.43%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V RG   W +  G  +++     GK GSVTV ++PAP+G G+ AA     +L+ AG++D +T S G+T+T  N  K
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAK 190          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29
Identity = 76/184 (41.30%), Postives = 112/184 (60.87%), Query Frame = 3
Query:  189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P++ G   W  +  + H+VP KV GK GSV + ++PAPRG G+VA    +++L+ AG+ D +T+++GST T  +  K  L
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVL 209          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+D V+ I  V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK ++I V       K+G   T+P +V G+ G+  V + PA  G+GI A    + V++ AGIDDV + + GS KT  N ++  +
Sbjct:   11 LEDRVVSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS-KTAINVIRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VK  +
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATI 140          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VK  +
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATI 140          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_META35.770e-3544.6930S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_METST9.843e-3544.1330S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_METB61.421e-3341.7630S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_NANEQ1.571e-3242.7830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_NATPD1.737e-3140.3330S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_HALWD2.269e-3139.2330S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_CENSY1.626e-2941.3030S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_LACSS7.086e-1740.0030S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_CLOPS1.745e-1538.5730S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOPE1.745e-1538.5730S ribosomal protein S5 OS=Clostridium perfringen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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