FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VK  +
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATI 140          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L+++V+ I  V K  + G+R RF A VVVGD +GHVG G+  ++EV  AIR A+  AK ++I V             T+P ++ G+ G+  V + PA  G G++A    + VL+ AGI DV + S GS+  + N V+  +
Sbjct:   10 ELEEKVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGMGKAQEVPEAIRKAVEDAKKNLIEVPI--------VNTTIPHQIVGRFGAGRVFLKPASEGTGVIAGGPVRAVLELAGIGDVLSKSLGSSNPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_UREU1 (30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGA 169          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_UREPA (30S ribosomal protein S5 OS=Ureaplasma parvum GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGA 169          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_UREP2 (30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  318 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGA 169          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_OCEIH (30S ribosomal protein S5 OS=Oceanobacillus iheyensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 50/140 (35.71%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AI+ A+  AK ++I V        +G   T+P ++ G+ GS  V M PA  G G+++    + +L+ AG+ D+ T S GS   + N ++  L
Sbjct:   12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKNLISV------PIVGT--TIPHEIHGQFGSGNVLMKPAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPI-NMIRATL 142          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +++D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ S+I V        +G   T+P +  G  G   + M PA  G+G+ A    + V++ AGIDDV TS R  + T  N V+
Sbjct:   11 EIEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEV------PIVGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDV-TSKRLGSNTAVNVVR 139          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATV 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  309 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            ++ +++++KI  V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P ++ GK G+ T+ M PA  G G++A    +++L+  G+ D+ T  +GS
Sbjct:    7 NQYQEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDILTKIKGS 128          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STACT (30S ribosomal protein S5 OS=Staphylococcus carnosus (strain TM300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD  G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V + PA  G G++A    + VL+ AGI D+ + S GS   + N V+  L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKKGRVGFGTGKAQEVPEAIKKAVEAAKKDLVTVNR--------VEGTTPHTITGRFGSGSVLLKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATL 141          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_CLOP11.745e-1538.5730S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_BACSK2.280e-1536.8830S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_UREU12.977e-1537.0130S ribosomal protein S5 OS=Ureaplasma urealyticum... [more]
RS5_UREPA2.977e-1537.0130S ribosomal protein S5 OS=Ureaplasma parvum GN=r... [more]
RS5_UREP22.977e-1537.0130S ribosomal protein S5 OS=Ureaplasma parvum sero... [more]
RS5_OCEIH2.977e-1535.7130S ribosomal protein S5 OS=Oceanobacillus iheyens... [more]
RS5_PEDPA3.888e-1539.1330S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]
RS5_GEOSW5.078e-1536.8830S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_FUSNN5.078e-1530.7730S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_STACT6.633e-1536.1730S ribosomal protein S5 OS=Staphylococcus carnosu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
back to top