EY679986

Overview
NameEY679986
Unique NameEY679986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.111e-96
Identity = 173/242 (71.49%), Postives = 194/242 (80.17%), Query Frame = 3
Query:   81 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGY+IAGGPLGEVTDP+YPGGSFDP GLA+D +A    ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 255          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.111e-96
Identity = 183/246 (74.39%), Postives = 199/246 (80.89%), Query Frame = 3
Query:   42 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGY+IAGGPLGEVTDP+YPGGSFDP GLADD +AL   ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 237          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 7.111e-96
Identity = 180/248 (72.58%), Postives = 198/248 (79.84%), Query Frame = 3
Query:   42 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGY+IAGGPLGEV DPLYPGGSFDP GLADD +A    ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 242          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 6.020e-95
Identity = 175/255 (68.63%), Postives = 201/255 (78.82%), Query Frame = 3
Query:   42 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGY++AGGPLGEVTDP+YPGG+FDP GLADD  A  + ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 259          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.862e-95
Identity = 175/255 (68.63%), Postives = 200/255 (78.43%), Query Frame = 3
Query:   42 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGY++AGGPLGEVTDP+YPGG+FDP GLADD  A    ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 259          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.063e-91
Identity = 171/250 (68.40%), Postives = 194/250 (77.60%), Query Frame = 3
Query:   42 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MATST AL+S+F G+ +      NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGY++AGGPLGEV DP+YPGGSFDP GLADD +A    ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 MATSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHL 246          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 7.615e-90
Identity = 166/251 (66.14%), Postives = 192/251 (76.49%), Query Frame = 3
Query:   42 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA +T   S++  G++  L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGY++AGGPLGEVTDP+YPGGSFDP GLADD       ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 MAAATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHL 249          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 3.779e-89
Identity = 166/247 (67.21%), Postives = 190/247 (76.92%), Query Frame = 3
Query:   42 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKI 761
            MATS +   S+F G+        NEL        GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGY++ GGPLGE  DP+YPGG+FDP GLADD  A    ++++ K  ++      GFFVQAI   KGP   +
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.100e-88
Identity = 158/209 (75.60%), Postives = 173/209 (82.78%), Query Frame = 3
Query:  150 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGY+IAGGPLGEV DPLYPGGSFDP GLA+  +A    ++++ K  ++      GFFV AI   KGP   +   L
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHL 209          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.876e-88
Identity = 166/248 (66.94%), Postives = 187/248 (75.40%), Query Frame = 3
Query:   42 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDP GL DD +     ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 245          
The following BLAST results are available for this feature:
BLAST of EY679986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB2B_PINSY7.111e-9671.49Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_SOYBN7.111e-9674.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ORYSJ7.111e-9672.58Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY6.020e-9568.63Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY7.862e-9568.63Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_POLMU1.063e-9168.40Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_PHYPA7.615e-9066.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI3.779e-8967.21Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_PEA1.100e-8875.60Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE1.876e-8866.94Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-B11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679986 ID=EY679986; Name=EY679986; organism=Citrus sinensis; type=EST; length=869bp
CTCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAACC
TCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGC
CCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAA
CCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGA
GTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGG
TGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACC
CAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGG
GCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAA
CGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCT
TCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCT
CAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGT
TGAGGGTTACAAAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATGGGGTTTGGCTGATGACACGAAG
GCTTTGCTGAACTCAAGGTTAAGGAAACAAAAATGGAAGGTTGGCTATGT
TCCCCATGTTGGTTTCTTCGTTCAGGCCATTTGCCCCAGCAAGGGACCCT
TTACGAAAATTGGCCAACCACTTTGGGGCTAATCCGTGTAAAAAAAAAGG
CTGGGGGCCTTACCCACCCAACTTTTTCCCCCGGAAAAGGGAAACCTCGG
GTGGAAAAAAAATTTTTTC
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