EY679986

Overview
NameEY679986
Unique NameEY679986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.373e-83
Identity = 148/187 (79.14%), Postives = 161/187 (86.10%), Query Frame = 3
Query:  216 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGY+IAGGPLGEVTDP+YPGGSFDP GLADD +A    ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 187          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.105e-72
Identity = 147/223 (65.92%), Postives = 165/223 (73.99%), Query Frame = 3
Query:   78 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSK 743
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGY+IA GPLGEVTDPLYP GSFD  GLA+DT+A    ++++ K  ++      GFFVQAI   K
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRK 239          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.443e-72
Identity = 136/215 (63.26%), Postives = 162/215 (75.35%), Query Frame = 3
Query:  144 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGY++ GGP GE  DPLYPG SFDP GLADD       ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHL 234          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.221e-71
Identity = 134/204 (65.69%), Postives = 154/204 (75.49%), Query Frame = 3
Query:  168 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGY++ GGP GE  DPLYPG SFDP GLADD       ++++ K  ++      GFFVQAI   KGP   +   L
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHL 237          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 8.193e-68
Identity = 137/243 (56.38%), Postives = 169/243 (69.55%), Query Frame = 3
Query:   45 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGP-LGEVTDPLYPGGS-FDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKI 761
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG++I G P +GE  D LYPGG  FDP GLADD       ++++ K  ++      GFFVQAI   KGP   +
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.825e-67
Identity = 141/246 (57.32%), Postives = 171/246 (69.51%), Query Frame = 3
Query:   42 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAG-GPLGEVTDPLYPGGS-FDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKI 761
            MA++ MA +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG++I G   +GE  D LYPGG  FDP GLADD       ++++ K  ++      GFFVQAI   KGP   +
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.146e-61
Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 3
Query:  183 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLG--EVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGP 749
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E Y+  GG  G  +  D LYPGG FDP GLADD       ++++ K  ++     +GFFVQAI   KGP
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGP 226          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.075e-59
Identity = 121/208 (58.17%), Postives = 146/208 (70.19%), Query Frame = 3
Query:  147 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKI 761
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGY++ GGP GE  DPLYPG +FDP GLADD       ++++ K  ++     +GFFVQAI   KGP   +
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.077e-43
Identity = 86/127 (67.72%), Postives = 100/127 (78.74%), Query Frame = 3
Query:  384 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTKALLNSRLRKQK-WKVGYVPHVGFFVQAICPSKGPFTKI 761
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGY++ GGPLGE  DPLYPG +FDP GLADD +A    ++++ K  ++      GFFVQAI   KGP   +
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 127          
BLAST of EY679986 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.841e-33
Identity = 93/216 (43.06%), Postives = 118/216 (54.63%), Query Frame = 3
Query:  156 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYKIAGGPLGEVTDPLYPGGSFDPWGLADDTK--ALLNSRLRKQKWKVGYVPHVGFFVQAICPSKGPFTKIGQPL 773
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E Y+I  G   +  D L+PGG FDP GLA D +  ALL  +  K   ++     +GFF+QA    +GP   + + L
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIK-NGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 258          
The following BLAST results are available for this feature:
BLAST of EY679986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_CUCSA2.373e-8379.14Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_MALDO1.105e-7265.92Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE1.443e-7263.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.221e-7165.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC8.193e-6856.38Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.825e-6757.32Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE1.146e-6162.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA4.075e-5958.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.077e-4367.72Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH3.841e-3343.06Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-B11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679986 ID=EY679986; Name=EY679986; organism=Citrus sinensis; type=EST; length=869bp
CTCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAACC
TCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGC
CCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAA
CCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGA
GTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGG
TGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACC
CAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGG
GCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAA
CGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCT
TCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCT
CAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGT
TGAGGGTTACAAAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATGGGGTTTGGCTGATGACACGAAG
GCTTTGCTGAACTCAAGGTTAAGGAAACAAAAATGGAAGGTTGGCTATGT
TCCCCATGTTGGTTTCTTCGTTCAGGCCATTTGCCCCAGCAAGGGACCCT
TTACGAAAATTGGCCAACCACTTTGGGGCTAATCCGTGTAAAAAAAAAGG
CTGGGGGCCTTACCCACCCAACTTTTTCCCCCGGAAAAGGGAAACCTCGG
GTGGAAAAAAAATTTTTTC
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