EY678998

Overview
NameEY678998
Unique NameEY678998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.432e-57
Identity = 114/171 (66.67%), Postives = 131/171 (76.61%), Query Frame = 1
Query:   37 LKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSF+CEL FR+ G  P +    E  + GNAGEP
Sbjct:   37 LKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNAGEP 206          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 3.528e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = 1
Query:   67 SKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   41 SSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGE-LESGNAGEP 198          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.287e-55
Identity = 111/169 (65.68%), Postives = 134/169 (79.29%), Query Frame = 1
Query:   37 LKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSF+CEL FR+ G  P +    E  + GNAGEP
Sbjct:   37 LKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNAGEP 201          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.227e-53
Identity = 107/168 (63.69%), Postives = 127/168 (75.60%), Query Frame = 1
Query:   40 KKVSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            K+V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   26 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 192          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.138e-46
Identity = 96/166 (57.83%), Postives = 117/166 (70.48%), Query Frame = 1
Query:   40 KKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            K  + R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   39 KHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGE-LESGNAGEP 200          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.824e-38
Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   52 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+F+C L +++ G  P +    E  + GNAGEP
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGE-LESGNAGEP 175          

HSP 2 Score: 31.9574 bits (71), Expect = 4.824e-38
Identity = 31/82 (37.80%), Postives = 39/82 (47.56%), Query Frame = 2
Query:  626 LDAGAWPNGWAPPQIHRLKTQLVNATLIKIAENQILCPHPPGRYHQEEKPPGPQS*THGKGFFLNICMPPPLPRKGRMREKF 871
            LDAGA   G      + +  Q+VNATL+ IA+N       PG Y  EE P  P   T G  F     +  PL R GRM + +
Sbjct:  203 LDAGAGRMGDTTQ--YTVNNQMVNATLMNIADNPTNV-QLPGVYKNEEIPRVPIVCT-GNDF---STLYAPLIRDGRMEKYY 277          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.343e-18
Identity = 52/95 (54.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  145 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 429
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK 57          

HSP 2 Score: 25.7942 bits (55), Expect = 9.343e-18
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  486 PIMMSAGKLEKGQCWRTPAKL 548
            PIMMSAG+LE G     PAK+
Sbjct:   62 PIMMSAGELESGNAGE-PAKM 81          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.527e-16
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  322 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDG 477
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+F+CEL F + G
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMG 55          

HSP 2 Score: 26.9498 bits (58), Expect = 3.527e-16
Identity = 29/93 (31.18%), Postives = 39/93 (41.94%), Query Frame = 2
Query:  464 FAKMGINPNYDECRKIGKGAMLENPR*VDQAKY------PGGTLTFIRRGKKVLPHESMILDAGAWPNGWAPPQIHRLKTQLVNATLIKIAEN 724
            F KMGI         +  G  LE+P   D A+           L  +R    VL    +   AG +  G      + + TQLVNATL+ IA+N
Sbjct:   51 FEKMGIEVT------LISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQ----YTVNTQLVNATLMNIADN 133          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  322 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDG 477
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+F+CEL F + G
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMG 55          
The following BLAST results are available for this feature:
BLAST of EY678998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA2_TOBAC1.432e-5766.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.528e-5669.81Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.287e-5565.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU6.227e-5363.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.138e-4657.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE4.824e-3849.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY9.343e-1854.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.527e-1665.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.958e-1467.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-G12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678998 ID=EY678998; Name=EY678998; organism=Citrus sinensis; type=EST; length=916bp
CCGGGAATTTCCCCGGGGTCGAACCCACGCGTCCGCTTGAAGAAGGTAAG
CTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTG
CTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTT
GCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGC
TGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTG
TCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTG
GACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCT
TGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTC
CTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCGA
TGTGAGCTTTGTTTTCGCCAAGATGGGCATCAACCCCAATTATGATGAGT
GCCGGAAAATTGGAAAAGGGGCAATGCTGGAGAACCCCCGCTAAGTTGAT
CAGGCAAAGTACCCGGGAGGCACCTTGACATTTATCAGGAGGGGAAAAAA
GGTGCTGCCTCATGAATCAATGATTCTTGATGCAGGAGCCTGGCCTAATG
GGTGGGCCCCACCCCAAATACACCGATTAAAAACCCAATTGGTTAACGCC
ACACTCATAAAAATTGCTGAAAACCAAATTTTGTGTCCACATCCCCCTGG
AAGGTACCACCAGGAGGAAAAACCCCCGGGGCCCCAATCCTAGACCCACG
GAAAAGGATTTTTCCTCAACATTTGTATGCCCCCTCCTCTTCCCCGGAAG
GGGCGCATGAGGGAAAAATTCTCTCCCGGGGCCACCCAAACAGGGGGAGA
GTCCCGTGTTGCGGGG
back to top