EY678998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.432e-57 Identity = 114/171 (66.67%), Postives = 131/171 (76.61%), Query Frame = 1 Query: 37 LKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 LKKV + + KV + S +I AE D KQT DRWKGL D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSF+CEL FR+ G P + E + GNAGEP Sbjct: 37 LKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNAGEP 206
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 218.779 bits (556), Expect = 3.528e-56 Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = 1 Query: 67 SKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 S ++ FK A EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSF+CEL F + G P + E + GNAGEP Sbjct: 41 SSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGE-LESGNAGEP 198
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.287e-55 Identity = 111/169 (65.68%), Postives = 134/169 (79.29%), Query Frame = 1 Query: 37 LKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 LKKV ++ + KV + + ++ A EVDE TK+DRWKGL + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSF+CEL FR+ G P + E + GNAGEP Sbjct: 37 LKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNAGEP 201
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 6.227e-53 Identity = 107/168 (63.69%), Postives = 127/168 (75.60%), Query Frame = 1 Query: 40 KKVSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 K+V+S + S + + T EN K+ D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSF+CEL F + G P + E + GNAGEP Sbjct: 26 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 192
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 1.138e-46 Identity = 96/166 (57.83%), Postives = 117/166 (70.48%), Query Frame = 1 Query: 40 KKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 K + R P S S + +T + EN++ D+W LA D SDDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSF+CEL F + G P + E + GNAGEP Sbjct: 39 KHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGE-LESGNAGEP 200
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.824e-38 Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 1 Query: 52 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537 +R+ V A ++ A + + RW+ + D SDDQQDITRG+ VD LFQ G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+F+C L +++ G P + E + GNAGEP Sbjct: 18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGE-LESGNAGEP 175 HSP 2 Score: 31.9574 bits (71), Expect = 4.824e-38 Identity = 31/82 (37.80%), Postives = 39/82 (47.56%), Query Frame = 2 Query: 626 LDAGAWPNGWAPPQIHRLKTQLVNATLIKIAENQILCPHPPGRYHQEEKPPGPQS*THGKGFFLNICMPPPLPRKGRMREKF 871 LDAGA G + + Q+VNATL+ IA+N PG Y EE P P T G F + PL R GRM + + Sbjct: 203 LDAGAGRMGDTTQ--YTVNNQMVNATLMNIADNPTNV-QLPGVYKNEEIPRVPIVCT-GNDF---STLYAPLIRDGRMEKYY 277
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 9.343e-18 Identity = 52/95 (54.74%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 145 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 429 GLAYD SDDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR VPLILGIWGGK Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK 57 HSP 2 Score: 25.7942 bits (55), Expect = 9.343e-18 Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 486 PIMMSAGKLEKGQCWRTPAKL 548 PIMMSAG+LE G PAK+ Sbjct: 62 PIMMSAGELESGNAGE-PAKM 81
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.527e-16 Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 322 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDG 477 YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+F+CEL F + G Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMG 55 HSP 2 Score: 26.9498 bits (58), Expect = 3.527e-16 Identity = 29/93 (31.18%), Postives = 39/93 (41.94%), Query Frame = 2 Query: 464 FAKMGINPNYDECRKIGKGAMLENPR*VDQAKY------PGGTLTFIRRGKKVLPHESMILDAGAWPNGWAPPQIHRLKTQLVNATLIKIAEN 724 F KMGI + G LE+P D A+ L +R VL + AG + G + + TQLVNATL+ IA+N Sbjct: 51 FEKMGIEVT------LISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQ----YTVNTQLVNATLMNIADN 133
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14 Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 322 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDG 477 YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+F+CEL F + G Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMG 55 The following BLAST results are available for this feature:
BLAST of EY678998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >EY678998 ID=EY678998; Name=EY678998; organism=Citrus sinensis; type=EST; length=916bpback to top |