EY680431

Overview
NameEY680431
Unique NameEY680431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680431 vs. ExPASy Swiss-Prot
Match: RHGA_ASPAC (Rhamnogalacturonase A OS=Aspergillus aculeatus GN=rhgA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.994e-16
Identity = 60/217 (27.65%), Postives = 105/217 (48.39%), Query Frame = 2
Query:   74 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSRITYERVKGT----YTVKPVHFACSDSLPCVDVTLSVIKL 712
            LR     + +V  + + ++P  H   D C    V+++++   G+    DGI +  S ++ +H   +   D+CV++++  +N+ V ++ C    G ++GSLG D     V++I  R+V   ++     IK+  GGSG+V  VL  N         + ID ++   +        V L+ IT +  KGT     T  P+   CSD+ PC D+TL  I +
Sbjct:  148 LRLTDVTHFSVHDVILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG--DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 356          
BLAST of EY680431 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPAC (Polygalacturonase 1 OS=Aspergillus aculeatus GN=pga1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.994e-16
Identity = 64/198 (32.32%), Postives = 99/198 (50.00%), Query Frame = 2
Query:   62 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV-SSPGDSP---NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSRITYERVKGT 634
            KP     +   N  ++G+ I NSP           + + D+++ +S GD     NTD   +  S  V I  + +   DDCV++ +G  N+Y     C  GHG+SIGS+G   DNT   V N+T  D  + N+ NGVRIKT    +GSV  V + +I ++ + +  IV+ Q Y D  T    T+ V ++    + V G+
Sbjct:  142 KPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDNT---VKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGD--TSSTPTTGVPITDFVLDNVHGS 333          
BLAST of EY680431 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.418e-15
Identity = 60/196 (30.61%), Postives = 96/196 (48.98%), Query Frame = 2
Query:   95 NVTVTGITIQNSP-QCH------------LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQ-LPIVIDQFYCDKSTCKNQTSAVALSRITYERVKGT 634
            N  +T + IQN P  C             L  DN  G   +  S S P  + NTDG  + +S  V +  +++   DDCV++ +G +N+ V N+ C  GHG+SIGS+G   DN    V  +      + N+ NG RIK+  G +G++  V + NI ++ +    + + Q Y +       T+ V +S I + +V GT
Sbjct:  138 NSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPA-AHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSDNV---VDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGT 328          
BLAST of EY680431 vs. ExPASy Swiss-Prot
Match: PGLR2_RALSO (Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 56/200 (28.00%), Postives = 88/200 (44.00%), Query Frame = 2
Query:   65 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSP-------------GDSP---------------NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN----VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMH----NTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFY 556
            P  ++ Y     T+ G+T+QNSP  H+      GV    + + +P             G +P               NTDG     S +V++  S +  GDD V+++         ++ HN +   GHG+SIGS     T   VSN+ V D+ M     +  NG+RIK+     G V  +++  I +  V+ P+V D FY
Sbjct:  205 PRLIQTYNGSAFTLYGVTVQNSPNFHIVTTGTSGVTAWGIKIVTPSLAYAVAGYKCPSGSTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLAYSYINTGDDHVAVKASSGPTRNLLFAHN-HFYYGHGLSIGS----ETNTGVSNMLVTDLTMDGNDSSAGNGLRIKSDASRGGKVTNIVYDGICMRNVKEPLVFDPFY 399          
BLAST of EY680431 vs. ExPASy Swiss-Prot
Match: PGLR1_RALSO (Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 57/200 (28.50%), Postives = 90/200 (45.00%), Query Frame = 2
Query:   65 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSP-------------GDSP---------------NTDGIHLQNSKDVLIHTSNLACGDDCVSIQT--GCSN--VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTM----NGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFY 556
            P  ++ Y     T+  +T+QNSP  H+      GV    + + +P             G +P               NTDG     S +V++  S ++ GDD V+I+   G +   ++ HN +   GHG+SIGS     T   VSN+ V D+ M        NG+RIK+     G V  ++++ I +  V+ P+V D FY
Sbjct:  207 PRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHN-HFYYGHGLSIGS----ETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFY 401          
The following BLAST results are available for this feature:
BLAST of EY680431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RHGA_ASPAC8.994e-1627.65Rhamnogalacturonase A OS=Aspergillus aculeatus GN=... [more]
PGLR1_ASPAC8.994e-1632.32Polygalacturonase 1 OS=Aspergillus aculeatus GN=pg... [more]
PGLR_GIBFU3.418e-1530.61Polygalacturonase OS=Gibberella fujikuroi GN=PGA P... [more]
PGLR2_RALSO1.029e-1128.00Polygalacturonase OS=Ralstonia solanacearum GN=pgl... [more]
PGLR1_RALSO2.994e-1128.50Polygalacturonase OS=Ralstonia solanacearum GN=pgl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-A05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680431 ID=EY680431; Name=EY680431; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGAAGCCCCAACGCCGATAAGAAGTGAACTATCTGGGAAAA
TGCCAAGCATCAAGCCAACAGCTTTGAGGTTCTACGGGAGTTTTAATGTT
ACAGTTACCGGAATAACAATTCAAAACAGTCCGCAATGCCACCTCAAGTT
TGATAATTGCATTGGAGTTGTGGTACATGATGTGAGCGTTTCATCGCCTG
GTGATAGTCCCAACACAGATGGAATTCACCTGCAAAACTCCAAGGATGTG
CTAATTCATACTTCCAATCTTGCATGCGGAGACGACTGTGTTTCTATTCA
GACTGGATGCTCAAATGTATACGTACATAATGTGAACTGTGGTCCAGGAC
ATGGAATCAGCATTGGAAGTCTGGGAAAAGATAACACCAAAGCATGTGTC
TCAAACATTACTGTCCGAGATGTCATGATGCATAACACAATGAATGGTGT
CAGAATCAAGACTTGGCAGGGTGGATCAGGTTCTGTGCAGGGGGTACTTT
TCTCAAACATTCAAGTTTCTGAGGTCCAACTTCCAATTGTGATTGACCAA
TTCTATTGTGACAAAAGTACATGCAAGAACCAAACATCAGCTGTGGCTCT
ATCAAGAATCACCTATGAAAGAGTTAAAGGGACATACACAGTAAAACCAG
TACACTTTGCCTGCAGTGACAGCCTTCCATGTGTAGATGTAACTCTATCG
GTTATAAAGCTAAAACCAGTGAAAAAACGCCACCCCATGTATGAATCCCC
ATGGCGGGGAGGCATTTGGGGAATCCACCCCCCCCAACTCCCCCCCCCAA
TGGCTGGTTTACAAACGGGCAAACCCCCCAACAAAAA
back to top