DY257284

Overview
NameDY257284
Unique NameDY257284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.221e-26
Identity = 75/214 (35.05%), Postives = 113/214 (52.80%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            +GVF+  T    LV         +  E  L   + VV+T I G+ ++G L  GN NG LLP+ ++ +E+Q  R  +P  +    + +RL+A+GN +  ND  AL H +L     E+IA  L VEV+R TIAG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++ +GL  N      GS+TT  EL  IE      E
Sbjct:   13 IGVFATCTEDLALVPPLTKPEVCTILEEALD--VRVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 219          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.788e-26
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  164 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            + VV+T++ G+ ++G L A N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +  G+ VN   A  G DTT  EL+ +E    L
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPELARLEDALYL 220          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.462e-26
Identity = 74/214 (34.58%), Postives = 109/214 (50.93%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++ +GL  N      GSDTT  EL  IE      E
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLD--ARIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLANSKNYLAGSDTTGPELGRIEEALGFLE 219          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.462e-26
Identity = 73/220 (33.18%), Postives = 109/220 (49.55%), Query Frame = 2
Query:   47 FENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L AGN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++  GL VND     G+ T+  EL  +E VF   E
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNATSGFELGRVEDVFGFLE 220          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.455e-25
Identity = 78/216 (36.11%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            R     S  VGVF+  T+ Y LV     ES  S FE EL   +  V T+I G+  +G L  GN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++ +GL  N+     G +TT  EL  IE
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVANNTGYIAGEETTGPELGRIE 214          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.470e-25
Identity = 71/207 (34.30%), Postives = 109/207 (52.66%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            +GVF+  T    +V IG +         +L   + V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ + +GL  N      GS+TT  EL  +E
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLLAEQLD--VKVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNTTGHELGRVE 211          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.546e-24
Identity = 76/219 (34.70%), Postives = 118/219 (53.88%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y ++  G      S  +  +A V+   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE + R  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.631e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.631e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.631e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
The following BLAST results are available for this feature:
BLAST of DY257284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METMA2.221e-2635.05Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METKA3.788e-2636.87Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_METBF6.462e-2634.58Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METB66.462e-2633.18Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_NATPD2.455e-2536.11Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_METBU5.470e-2534.30Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_SULSO3.546e-2434.70Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIY4.631e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN4.631e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL4.631e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD05FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257284 ID=DY257284; Name=DY257284; organism=Citrus sinensis; type=EST; length=920bp
TCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTATGTTTG
AGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTATTGC
TTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGAGGCTGA
GTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCACTAGGA
TTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCACAC
ACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACCTGATCA
AGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCAATTGTA
TAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGACAGGGAA
ACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGAC
AATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCTCCAACAGAG
GAGGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAACTTTCA
ACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGAACCGTGGAAGCGA
AGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGAT
CAGACACCACAGCAACTGAACTCTCTGTTATTGAGAGTGTTTTCAAGTTG
AGGGAAGCTCAACCTAGTGCCCTTGTGGACGAGATGAGGAAATCTTTAAT
TGACAGTTATGTCTAAATTACTTTGGCTTACAGTCTTTTTTGTCATGAAA
TTGAAACAATTTTTGTCAACTCTGAAAATGTTTTCCCTTAATGATAGTAT
GGTATTTTCCAAAAATCTTGTATCTCAATTCAAAAGTATCCTTATTCAAA
AAAAAGGCCAAATGCCGAAA
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