DY257284

Overview
NameDY257284
Unique NameDY257284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.631e-24
Identity = 75/224 (33.48%), Postives = 107/224 (47.77%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREA 709
            R  F  S  VGVF++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++ +G+         G DTT  EL+ IE      E+
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGPELTRIEDTLGYLES 222          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   38 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            RL    +  +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 68/222 (30.63%), Postives = 110/222 (49.55%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            M   L +E    +G+F+++     +V    S  + +  +  L   + +VKT + G+ IIG L +GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L +   +P+  GT+N GS ++  GL  N      G +T+  E+  I  VF
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLANSTGYLAGIETSGFEMGRIADVF 216          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.002e-23
Identity = 71/212 (33.49%), Postives = 108/212 (50.94%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            +GV+  + +   L+ +G    F  T   +LA  + V  + TSI  TR+IG LC  N  G+LLP T    E   L+  L  +V V  ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG    G     +N G  +HP    ED+   S LL V +   ++N G   +++G+  N+     GS TT  E+ ++   F
Sbjct:   14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGPEIMMLTRAF 219          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +I A    N      G +TT  EL+ IE      E
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.120e-23
Identity = 73/214 (34.11%), Postives = 109/214 (50.93%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            +GVF+  T    LV         +  E E+ DV  V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++ +GL  N      GS+TT  EL  IE      E
Sbjct:   13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.733e-23
Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            +GV+    + + L+     E         L+  +   + S+ GTR++G   AGN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+  ++ +F
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEMMQLQRIF 221          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.319e-22
Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 706
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L +GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++  GL  N      GS TT  EL  IE VF   E
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVTTGFELGRIEEVFGFLE 220          
The following BLAST results are available for this feature:
BLAST of DY257284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_HALWD4.631e-2433.48Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_SULIM7.899e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK7.899e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA7.899e-2434.25Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_METPE1.760e-2330.63Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_NITMS3.002e-2333.49Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_METTH3.920e-2331.86Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METAC5.120e-2334.11Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_THEPD8.733e-2330.48Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METMJ3.319e-2233.18Translation initiation factor 6 OS=Methanoculleus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DD05FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257284 ID=DY257284; Name=DY257284; organism=Citrus sinensis; type=EST; length=920bp
TCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTATGTTTG
AGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTATTGC
TTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGAGGCTGA
GTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCACTAGGA
TTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCACAC
ACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACCTGATCA
AGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCAATTGTA
TAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGACAGGGAA
ACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGAC
AATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCTCCAACAGAG
GAGGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAACTTTCA
ACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGAACCGTGGAAGCGA
AGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGAT
CAGACACCACAGCAACTGAACTCTCTGTTATTGAGAGTGTTTTCAAGTTG
AGGGAAGCTCAACCTAGTGCCCTTGTGGACGAGATGAGGAAATCTTTAAT
TGACAGTTATGTCTAAATTACTTTGGCTTACAGTCTTTTTTGTCATGAAA
TTGAAACAATTTTTGTCAACTCTGAAAATGTTTTCCCTTAATGATAGTAT
GGTATTTTCCAAAAATCTTGTATCTCAATTCAAAAGTATCCTTATTCAAA
AAAAAGGCCAAATGCCGAAA
back to top