DY257284

Overview
NameDY257284
Unique NameDY257284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.057e-20
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 2
Query:  170 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691
            V + ++  + ++G     N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T   EL  ++ V
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGPELMRMQQV 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.298e-20
Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVA----IGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            +G++    + Y +V     +   +    TF+ E      +++T+I  + +IG   AGN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   14 IGIYIFTNDKYTIVPKNLDVETIQKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSATTGPEILRIQRAF 221          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.920e-20
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 2
Query:  170 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 694
            +++T+I  + ++G L  GN + +LLP T    E++ ++    D V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + TIA  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANRNGVLVGSSTTGAEILRIQRAF 221          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.920e-20
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 2
Query:  170 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 691
            V + ++  + ++G     N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G +T   E   I+ V
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGPEFMRIQQV 218          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.037e-20
Identity = 67/219 (30.59%), Postives = 106/219 (48.40%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG + + N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  + A +  N      G  TT+ EL  I+
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.630e-19
Identity = 70/228 (30.70%), Postives = 114/228 (50.00%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  +  F     +GV S  T  Y L  +   ++     +  L   IPV + +I  + +IG LC GN NGLL+P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   + + +  N   A  G DT+  EL  IE    L
Sbjct:    1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIGGDTSGPELLKIEEALDL 225          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.485e-19
Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  170 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++ + +         G+ T+  EL  IE
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRTSGPELGRIE 213          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.858e-19
Identity = 65/211 (30.81%), Postives = 107/211 (50.71%), Query Frame = 2
Query:   65 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            +GV S  T  + L      E+  + F+  L   +PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + IA    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  + A +  N   A  G DTT  E+  IE
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDTTGPEMLKIE 220          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.704e-18
Identity = 71/228 (31.14%), Postives = 110/228 (48.25%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 70/228 (30.70%), Postives = 109/228 (47.81%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
The following BLAST results are available for this feature:
BLAST of DY257284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PYRAE4.057e-2035.63Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_SULTO5.298e-2032.09Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_SULAC6.920e-2035.23Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_PYRAR6.920e-2035.06Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_PICTO9.037e-2030.59Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_METVS2.630e-1930.70Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_UNCMA4.485e-1935.47Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_META35.858e-1930.81Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_METMP1.704e-1831.14Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM62.226e-1830.70Translation initiation factor 6 OS=Methanococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DD05FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257284 ID=DY257284; Name=DY257284; organism=Citrus sinensis; type=EST; length=920bp
TCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTATGTTTG
AGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTATTGC
TTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGAGGCTGA
GTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCACTAGGA
TTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCACAC
ACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACCTGATCA
AGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCAATTGTA
TAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGACAGGGAA
ACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGAC
AATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCTCCAACAGAG
GAGGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAACTTTCA
ACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGAACCGTGGAAGCGA
AGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGAT
CAGACACCACAGCAACTGAACTCTCTGTTATTGAGAGTGTTTTCAAGTTG
AGGGAAGCTCAACCTAGTGCCCTTGTGGACGAGATGAGGAAATCTTTAAT
TGACAGTTATGTCTAAATTACTTTGGCTTACAGTCTTTTTTGTCATGAAA
TTGAAACAATTTTTGTCAACTCTGAAAATGTTTTCCCTTAATGATAGTAT
GGTATTTTCCAAAAATCTTGTATCTCAATTCAAAAGTATCCTTATTCAAA
AAAAAGGCCAAATGCCGAAA
back to top