DY257284

Overview
NameDY257284
Unique NameDY257284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 70/228 (30.70%), Postives = 109/228 (47.81%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.105e-17
Identity = 70/228 (30.70%), Postives = 109/228 (47.81%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 700
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANIKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of DY257284 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14
Identity = 57/219 (26.03%), Postives = 101/219 (46.12%), Query Frame = 2
Query:   29 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 685
            M  R+   ++  +GVF   T+   +V     +      E  L   +  VK+SI G  +IG L   N NG+++     D+E++         + V  I    +A+GN +A ND  A+    L  E  ++I D L V V   ++ G+ ++GS  + +N+G L+  + +  ++D    +  V    GTV RG  ++ A    N   A    ++T  E++ +E
Sbjct:    1 MLRRINIVDNPNIGVFILATDDLAVVPYNLLDEKVKLIEETLE--VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGACSLANSSGAIVAKESTGPEMARVE 214          
The following BLAST results are available for this feature:
BLAST of DY257284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METM73.797e-1830.70Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM51.105e-1730.70Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METS33.326e-1426.03Translation initiation factor 6 OS=Methanobrevibac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD05FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257284 ID=DY257284; Name=DY257284; organism=Citrus sinensis; type=EST; length=920bp
TCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTATGTTTG
AGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTATTGC
TTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGAGGCTGA
GTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCACTAGGA
TTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCACAC
ACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACCTGATCA
AGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCAATTGTA
TAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGACAGGGAA
ACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGAC
AATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCTCCAACAGAG
GAGGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAACTTTCA
ACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGAACCGTGGAAGCGA
AGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGAT
CAGACACCACAGCAACTGAACTCTCTGTTATTGAGAGTGTTTTCAAGTTG
AGGGAAGCTCAACCTAGTGCCCTTGTGGACGAGATGAGGAAATCTTTAAT
TGACAGTTATGTCTAAATTACTTTGGCTTACAGTCTTTTTTGTCATGAAA
TTGAAACAATTTTTGTCAACTCTGAAAATGTTTTCCCTTAATGATAGTAT
GGTATTTTCCAAAAATCTTGTATCTCAATTCAAAAGTATCCTTATTCAAA
AAAAAGGCCAAATGCCGAAA
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