FC871268

Overview
NameFC871268
Unique NameFC871268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.183e-59
Identity = 114/215 (53.02%), Postives = 147/215 (68.37%), Query Frame = 3
Query:   81 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAE 725
            AARPLVTV   + +      S + LP V +  IRPD+V F+   + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAP K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  ES  KT  A+  L++   +AD EK  +S+  R GKGK+RNR++  + GP+V+Y  +
Sbjct:    2 AARPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.302e-36
Identity = 84/173 (48.55%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  252 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKA 746
            KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V         S S   ++KT  A+ +LK+I AY+D  K   S+ IR G+GKMR R+   RKGPLVVY  +  + VKA
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKA 175          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 79/214 (36.92%), Postives = 110/214 (51.40%), Query Frame = 3
Query:  102 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSA-EGAKL 737
            V +LEG+       TV LP   +  +R D++         N RQPY    +AG +TSAESWG G  V+ +PRV G     AG+ A      GG +  APT   + W +++N  ++R            P  V  RGH I+ VP +P+VV D  +S+ K     +  K +G +AD E+AK ++ IR GKGK R RRY+  K  L+V    EG KL
Sbjct:    5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKL 213          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.013e-29
Identity = 70/206 (33.98%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 713
            + V SLEG+    A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T+   +V +++G   D  +A++ + IR GKGKMR R+Y + +GPL+V
Sbjct:    3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIV 199          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 69/213 (32.39%), Postives = 112/213 (52.58%), Query Frame = 3
Query:  102 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAE-GAKL 737
            V S+EG++  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D   SV+ T    ++ + +G Y D  +AK+ + IR G+GK R R+Y   KGPL+V   + G KL
Sbjct:    5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKL 208          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.221e-26
Identity = 65/206 (31.55%), Postives = 108/206 (52.43%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 713
            + V SL+GD+  +    + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E+V+ T    ++ K +G   D  +AK  + I+ GKGK+R R+Y + KGPLVV
Sbjct:    4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVV 200          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.595e-26
Identity = 71/190 (37.37%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  177 IRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKA 746
            IRPD++   + +      QP  V + AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D E+A +   IR GKGKMR RRY   K  LVV S   A L+ A
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAA 238          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 71/208 (34.13%), Postives = 107/208 (51.44%), Query Frame = 3
Query:  102 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAE 725
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G      + A      GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G MR RRY  RK  L+V   E
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGS-----RVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIVTGGE 201          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.350e-25
Identity = 77/206 (37.38%), Postives = 103/206 (50.00%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 713
            V V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD E+AKD   IR G+GK+R R+YI  K  LVV
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVV 198          
BLAST of FC871268 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.350e-25
Identity = 70/209 (33.49%), Postives = 103/209 (49.28%), Query Frame = 3
Query:  120 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKA 746
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT   ++ L+ IG Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E A ++KA
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGESAPILKA 208          
The following BLAST results are available for this feature:
BLAST of FC871268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_CAEEL3.183e-5953.0260S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI1.302e-3648.5560S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METKA9.034e-3036.9250S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METTH2.013e-2933.9850S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_METS32.225e-2832.3950S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_METST1.221e-2631.5550S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_PYRAE1.595e-2637.3750S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METMJ2.083e-2634.1350S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_METMP1.350e-2537.3850S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METBF1.350e-2533.4950S ribosomal protein L4P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871268 ID=FC871268; Name=FC871268; organism=Citrus sinensis; type=EST; length=748bp
CTTAACGCTGCGGCTCTGCCCCCTTCCCCATATATCCCCCAACAGAAAAA
AACACACACAAACCAAAACCAATGGCCGCCGCCGCCCGTCCTCTTGTAAC
CGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCC
CCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTC
GTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCTTACGCCGTTTCCAA
GAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCG
TCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGGCCAG
GGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAA
GATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATATG
CCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCC
CGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGA
TTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCTTAAAGTTCTGAAGC
AGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATT
CGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTACATTTCTCGCAAGGG
CCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTT
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