DY257283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 5.435e-22 Identity = 64/182 (35.16%), Postives = 102/182 (56.04%), Query Frame = 3 Query: 216 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR F FVTM +V++A +EK N ++ GR + VN ++ + + + ++VYVGNL V + L++ FSE G+V+ A+V T +S GFGFVT L+ LEG+ IRVN A Sbjct: 146 PSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 HSP 2 Score: 86.2705 bits (212), Expect = 3.412e-16 Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467 E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FVTM V++ N I L+G + GR I+VN+ E+ Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14 Identity = 50/181 (27.62%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +NG +I G+E+KVN P +Q D S + + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F + L G++IR N A Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14 Identity = 50/181 (27.62%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +NG +I G+E+KVN P +Q D S + + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F + L G++IR N A Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14 Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDL-----SLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677 VYI N +D++ L ++ + G +V+ D G+S+ F FV+ + EDAN +E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCF 340 HSP 2 Score: 76.6406 bits (187), Expect = 2.703e-13 Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+NG + R++ V + + +L E +N VY+ N + V E LK+ FS+ G+ LS KV R P KS GFGFV++ +N + G+ I V +A Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.194e-14 Identity = 58/163 (35.58%), Postives = 83/163 (50.92%), Query Frame = 3 Query: 210 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIG------GREIKVNITEKPLAQVDLSLLQAEDSNFVDST-YKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677 +TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E A + +EK+NG +G GR K + E+ L + Q + F S +Y+ NL +V E LK+ FSE G V S+KV P S GFGFV + Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAY 379
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13 Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + AQ + L E F ++YV ++ + ++ + +K F G++ S ++R P T K G+GF+ + +N L GQ +RV KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13 Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + AQ + L E F ++YV ++ + ++ + +K F G++ S ++R P T K G+GF+ + +N L GQ +RV KA Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13 Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + AQ + L E F ++YV ++ + ++ + +K F G++ S ++R P T K G+GF+ + +N L GQ +RV KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13 Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + AQ + L E F ++YV ++ + ++ + +K F G++ S ++R P T K G+GF+ + +N L GQ +RV KA Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13 Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + AQ + L E F ++YV ++ + ++ + +K F G++ S ++R P T K G+GF+ + +N L GQ +RV KA Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273 The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bpback to top |