DY257283

Overview
NameDY257283
Unique NameDY257283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1072
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.435e-22
Identity = 64/182 (35.16%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  216 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            PSE A+ +++GN+  ++++  L  + ++ G VE AEVIY++ T +SR F FVTM +V++A   +EK N  ++ GR + VN      ++ + +          +  ++VYVGNL   V +  L++ FSE G+V+ A+V     T +S GFGFVT             L+   LEG+ IRVN A
Sbjct:  146 PSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320          

HSP 2 Score: 86.2705 bits (212), Expect = 3.412e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467
            E A RVY+GN+P ++DN  L ++  EHG V +A V+YD+ TGRSR F FVTM  V++ N  I  L+G  + GR I+VN+ E+
Sbjct:  241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14
Identity = 50/181 (27.62%), Postives = 89/181 (49.17%), Query Frame = 3
Query:  222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            E  + +Y+GN+ R++    + ++  + G  +  ++I D  T  +  + FV       A A +  +NG +I G+E+KVN    P +Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F            +    L G++IR N A
Sbjct:    4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14
Identity = 50/181 (27.62%), Postives = 89/181 (49.17%), Query Frame = 3
Query:  222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            E  + +Y+GN+ R++    + ++  + G  +  ++I D  T  +  + FV       A A +  +NG +I G+E+KVN    P +Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F            +    L G++IR N A
Sbjct:    4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.872e-14
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDL-----SLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            VYI N    +D++ L ++  + G     +V+ D   G+S+ F FV+ +  EDAN  +E++NG EI G+ I V   +K +  Q +L      L Q   S +      +Y+ NL  T+  E L+K FS  G + SAKV    G SK  GFGFV F
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCF 340          

HSP 2 Score: 76.6406 bits (187), Expect = 2.703e-13
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            V+I N+ ++IDN  L       G +   +V+ D+    S+ +AFV  +T E A+  IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + V  E LK+ FS+ G+ LS KV R P   KS GFGFV++            +N   + G+ I V +A
Sbjct:  101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.194e-14
Identity = 58/163 (35.58%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  210 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIG------GREIKVNITEKPLAQVDLSLLQAEDSNFVDST-YKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +TP+     VY+ N+P+ I  DEL K   + G +  A V+ D+ +G SR F FV  +  E A + +EK+NG  +G      GR  K +  E+ L +      Q   + F  S    +Y+ NL  +V  E LK+ FSE G V S+KV   P    S GFGFV +
Sbjct:  222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAY 379          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   AQ  +  L  E   F     ++YV ++ + ++ + +K  F   G++ S  ++R P T K  G+GF+ +            +N   L GQ +RV KA
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   AQ  +  L  E   F     ++YV ++ + ++ + +K  F   G++ S  ++R P T K  G+GF+ +            +N   L GQ +RV KA
Sbjct:  129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   AQ  +  L  E   F     ++YV ++ + ++ + +K  F   G++ S  ++R P T K  G+GF+ +            +N   L GQ +RV KA
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   AQ  +  L  E   F     ++YV ++ + ++ + +K  F   G++ S  ++R P T K  G+GF+ +            +N   L GQ +RV KA
Sbjct:  130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.070e-13
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   AQ  +  L  E   F     ++YV ++ + ++ + +K  F   G++ S  ++R P T K  G+GF+ +            +N   L GQ +RV KA
Sbjct:  101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273          
The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ROC3_ARATH5.435e-2235.1631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
TIA1_MOUSE1.872e-1427.62Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN1.872e-1427.62Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PABP4_HUMAN1.872e-1435.95Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP3_ARATH3.194e-1435.58Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PUF60_RAT2.070e-1328.33Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB2.070e-1328.33Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE2.070e-1328.33Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN2.070e-1328.33Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN2.070e-1328.33Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bp
CATCATCATCATCTTTAATACTGTCTCAACAAAATCTCATTTTTTCAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCATCGAAGACT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTGCATCATCATCATCA
TCATCGGTTGACACGCCTTCGGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGA
AGTCGCCGATTTGCCTTTGTTACGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAA
GCAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGA
AGGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAA
TCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGAAGC
TGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTG
TAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTGGAG
AGTGTTCTACTTGTTGCAACATTGTATTTGAAATGTAAAACACAGGAATT
AGAATTATTGTAGTTCTCTTTTTTATATTGGTATGATGTGAAGCCTTGCT
GGTTCTCCGGCAAGGAAGTGAACCGTTCAATTTCAACAAAGGGGATTCAG
GCACTTTGTTTGCAAGCTCCACTTCATTTGGTGGAAATCCGAAAAAATCA
AAACCCTTGTTCTGGGACCCAACGAATTTTCAAAGGTTTTTTTCCTTTAA
AGAAAAACCACGTTTTGAAATT
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