DY257283

Overview
NameDY257283
Unique NameDY257283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1072
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV+ +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV    G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          

HSP 2 Score: 69.3218 bits (168), Expect = 4.316e-11
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            ++I N+ ++IDN  L       G +   +V+ D+    S+ + FV  +T E A   IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + +  E LK  F + G  LS KV     + KS GFGFV+F            +N   L G++I V +A
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12
Identity = 52/185 (28.11%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  135 ASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +S ED   R    A E            S     V++G +  N+D+  L +  +E+G +  A VI D  +GRS+ + +V  +T E A A +      EI GR + ++++  P         Q    NF D   +    V+VGNL+   T + L   F   G + S ++   P + +  GFG+VTF
Sbjct:  231 SSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.752e-12
Identity = 47/177 (26.55%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            RVY+G+I   +  D +       G ++   + +D  T + + FAFV  +  E A   +E++NG  +GGR IKV   +  P AQ  +  +Q E  +F     ++YV ++   ++ E +K  F   G +L  K+++        G+GF+ +            +N   L GQ +RV ++
Sbjct:  131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.752e-12
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK-----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752
            VY+ N+  +  +D+L     E+G +  A V+ D   G+S+ F FV  +  +DA   +E LNG +   +E  V   +K  ++ +  L    + N  ++  K     +YV NL  +++ E LK+ FS  G V S+KV R P GTSK  G GFV F            L+  ++E + + V
Sbjct:  217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK-SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK--GSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390          

HSP 2 Score: 70.4774 bits (171), Expect = 1.937e-11
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 3
Query:  228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            A  ++I N+  +ID+  L       G +   +V  D  +G+S+ + FV     E A   IEKLNG  +  +++ V     P  +       A  + F +    VYV NLA++ T + LK  F E G++ SA V +  G  KS GFGFV F            LN    + +   V +A
Sbjct:  123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.289e-12
Identity = 51/176 (28.98%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVD-STYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752
            VY  NI  +   +E  K+ + +G +    +  D + G+S+ F FV  +  E A   +++LN  EI G++I V   +K   +++    Q E++     S Y+   +++ NL  T+ SE L++ F   G + SA+V  V  T KS GFGFV F            +N  ++ G+ + V
Sbjct:  234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARV-MVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.989e-12
Identity = 50/192 (26.04%), Postives = 91/192 (47.40%), Query Frame = 3
Query:  231 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            R +Y+GN+ R++    + ++  + G  +  ++I ++   R               +  + FV      DA A +  +NG +I G+E+KVN    P +Q      + + SN     + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F            +    L G++IR N A
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190          

HSP 2 Score: 71.2478 bits (173), Expect = 1.136e-11
Identity = 47/188 (25.00%), Postives = 83/188 (44.15%), Query Frame = 3
Query:  210 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYK-------VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 749
            DT + F   V++G++   I  +++       G +  A V+ D  TG+S+ + FV+     DA   I  + G  +GGR+I+ N  T KP A         +   F D   +       VY G +A  +T +++++ FS  GQ++  +V          G+ FV F            +N + +EG  ++
Sbjct:  109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.989e-12
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            VYI N   ++D++ L +   ++GA    +V+ D + G+SR F FV+ +  EDA   ++ +NG ++ G+ I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K F+  G + SAKV    G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12
Identity = 50/177 (28.25%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK-----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752
            VY+ N+   +DN +  +I +  G V    +  D+  G+SR F FV  +  E A   ++++N  EI G+++ V   +K   ++D  L +  +S  ++   K     ++V NL  ++ SE L++ F   G + SA+V  V    KS GFGFV F            +N  +++G+ + V
Sbjct:  241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARV-MVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E AN  I+ +NG  +  +++ V  +I++K       S  +   +NF +    VY+ N+ + VT E  +K F + G++ SA +SR     KS GFGFV F            +N+  ++GQ++ V +A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E AN  I+ +NG  +  +++ V  +I++K       S  +   +NF +    VY+ N+ + VT E  +K F + G++ SA +SR     KS GFGFV F            +N+  ++GQ++ V +A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308          
The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PABP1_BOVIN1.342e-1233.11Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
GAR2_SCHPO1.342e-1228.11Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
PUF68_DROME1.752e-1226.55Poly(U)-binding-splicing factor half pint OS=Droso... [more]
PABP2_ARATH1.752e-1230.90Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP_DEBHA2.289e-1228.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIAR_MOUSE2.989e-1226.04Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
PABPB_XENLA2.989e-1233.11Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP_PICGU3.904e-1228.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI3.904e-1229.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU3.904e-1229.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bp
CATCATCATCATCTTTAATACTGTCTCAACAAAATCTCATTTTTTCAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCATCGAAGACT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTGCATCATCATCATCA
TCATCGGTTGACACGCCTTCGGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGA
AGTCGCCGATTTGCCTTTGTTACGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAA
GCAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGA
AGGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAA
TCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGAAGC
TGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTG
TAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTGGAG
AGTGTTCTACTTGTTGCAACATTGTATTTGAAATGTAAAACACAGGAATT
AGAATTATTGTAGTTCTCTTTTTTATATTGGTATGATGTGAAGCCTTGCT
GGTTCTCCGGCAAGGAAGTGAACCGTTCAATTTCAACAAAGGGGATTCAG
GCACTTTGTTTGCAAGCTCCACTTCATTTGGTGGAAATCCGAAAAAATCA
AAACCCTTGTTCTGGGACCCAACGAATTTTCAAAGGTTTTTTTCCTTTAA
AGAAAAACCACGTTTTGAAATT
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