DY257283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 69.3218 bits (168), Expect = 4.316e-11 Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12 Identity = 52/185 (28.11%), Postives = 83/185 (44.86%), Query Frame = 3 Query: 135 ASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677 +S ED R A E S V++G + N+D+ L + +E+G + A VI D +GRS+ + +V +T E A A + EI GR + ++++ P Q NF D + V+VGNL+ T + L F G + S ++ P + + GFG+VTF Sbjct: 231 SSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.752e-12 Identity = 47/177 (26.55%), Postives = 84/177 (47.46%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 RVY+G+I + D + G ++ + +D T + + FAFV + E A +E++NG +GGR IKV + P AQ + +Q E +F ++YV ++ ++ E +K F G +L K+++ G+GF+ + +N L GQ +RV ++ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.752e-12 Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK-----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752 VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E LNG + +E V +K ++ + L + N ++ K +YV NL +++ E LK+ FS G V S+KV R P GTSK G GFV F L+ ++E + + V Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK-SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK--GSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390 HSP 2 Score: 70.4774 bits (171), Expect = 1.937e-11 Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 A ++I N+ +ID+ L G + +V D +G+S+ + FV E A IEKLNG + +++ V P + A + F + VYV NLA++ T + LK F E G++ SA V + G KS GFGFV F LN + + V +A Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 2.289e-12 Identity = 51/176 (28.98%), Postives = 87/176 (49.43%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVD-STYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752 VY NI + +E K+ + +G + + D + G+S+ F FV + E A +++LN EI G++I V +K +++ Q E++ S Y+ +++ NL T+ SE L++ F G + SA+V V T KS GFGFV F +N ++ G+ + V Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARV-MVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.989e-12 Identity = 50/192 (26.04%), Postives = 91/192 (47.40%), Query Frame = 3 Query: 231 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 R +Y+GN+ R++ + ++ + G + ++I ++ R + + FV DA A + +NG +I G+E+KVN P +Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F + L G++IR N A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190 HSP 2 Score: 71.2478 bits (173), Expect = 1.136e-11 Identity = 47/188 (25.00%), Postives = 83/188 (44.15%), Query Frame = 3 Query: 210 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYK-------VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 749 DT + F V++G++ I +++ G + A V+ D TG+S+ + FV+ DA I + G +GGR+I+ N T KP A + F D + VY G +A +T +++++ FS GQ++ +V G+ FV F +N + +EG ++ Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.989e-12 Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677 VYI N ++D++ L + ++GA +V+ D + G+SR F FV+ + EDA ++ +NG ++ G+ I V +K + Q +L + + Y+ +YV NL + E L+K F+ G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12 Identity = 50/177 (28.25%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYK-----VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752 VY+ N+ +DN + +I + G V + D+ G+SR F FV + E A ++++N EI G+++ V +K ++D L + +S ++ K ++V NL ++ SE L++ F G + SA+V V KS GFGFV F +N +++G+ + V Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARV-MVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12 Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +NG + +++ V +I++K S + +NF + VY+ N+ + VT E +K F + G++ SA +SR KS GFGFV F +N+ ++GQ++ V +A Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.904e-12 Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +NG + +++ V +I++K S + +NF + VY+ N+ + VT E +K F + G++ SA +SR KS GFGFV F +N+ ++GQ++ V +A Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308 The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bpback to top |