DY257283

Overview
NameDY257283
Unique NameDY257283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1072
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.305e-11
Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+      A +        D+N       +YV  L KT++ + +++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.305e-11
Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  DEL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+   +P ++V       +D+N       +Y+  L +T+T + ++  FS  G++++++V     T  S G  F+ F
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.316e-11
Identity = 53/177 (29.94%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            ++I N+   IDN  L +     G V   +V  D+  G SR F FV  K   DA   IE +NG  + G E+ V  ++ +K      +S L+   +NF +    +YV N+    T E  ++ FS+ G+++SA + +     K  GFGFV F            LN    + Q + V +A
Sbjct:  140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD----RISKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSAALEK-DAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.316e-11
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDL-SLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E A   I+ +NG  +  +++ V      +A+ D  S  +   +NF +    VYV N+ +  T E  +  F + G++ SA ++R   + KS GFGFV F            LN+   +GQ++ V +A
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG---HHIAKKDRQSKFEEMKANFTN----VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.316e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 3
Query:  219 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDST----------YKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752
            SEF   VYI N   ++D++ L  +  ++G     +V+ D  +G+S+ F FV+  + E A   +E++NG +I G+ I V   +K + +      QAE     +             K+Y+ NL  T+  E L+  FS  G +   KV +  G SK  GFG + F            +N  +L  + + +
Sbjct:  187 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVER------QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 52/172 (30.23%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 752
            +Y+G++  ++    L  I    GAV    V  D  T  S  +A+V     + A   IEKLN T I G+  ++  +++     D SL +    N       +++ NL   + ++ L   FS  G +LS+KV+    T KS GFG+V F            LN  LL GQ I V
Sbjct:   37 LYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-----DPSLRKKGAGN-------IFIKNLHPDIDNKALYDTFSVFGNILSSKVA-TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          
The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ELAV3_MOUSE3.305e-1126.90ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV1_HUMAN3.305e-1129.66ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
PABP_KLULA4.316e-1129.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM4.316e-1128.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR4.316e-1128.28ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
PAB4L_HUMAN5.637e-1127.13Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
ELAV2_PONAB5.637e-1128.28ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE5.637e-1128.28ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN5.637e-1128.28ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP_CANGA7.362e-1130.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bp
CATCATCATCATCTTTAATACTGTCTCAACAAAATCTCATTTTTTCAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCATCGAAGACT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTGCATCATCATCATCA
TCATCGGTTGACACGCCTTCGGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGA
AGTCGCCGATTTGCCTTTGTTACGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAA
GCAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGA
AGGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAA
TCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGAAGC
TGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTG
TAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTGGAG
AGTGTTCTACTTGTTGCAACATTGTATTTGAAATGTAAAACACAGGAATT
AGAATTATTGTAGTTCTCTTTTTTATATTGGTATGATGTGAAGCCTTGCT
GGTTCTCCGGCAAGGAAGTGAACCGTTCAATTTCAACAAAGGGGATTCAG
GCACTTTGTTTGCAAGCTCCACTTCATTTGGTGGAAATCCGAAAAAATCA
AAACCCTTGTTCTGGGACCCAACGAATTTTCAAAGGTTTTTTTCCTTTAA
AGAAAAACCACGTTTTGAAATT
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