DY257283

Overview
NameDY257283
Unique NameDY257283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1072
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E AN  I+ +NG  +  +++ V  +I++K       S  +   +NF +    VY+ NL + ++ E  ++ F + G++ SA +SR     KS GFGFV +            +N+  ++GQ++ V +A
Sbjct:  138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNLDQEISEEEFRQMFEKFGEITSATLSR-DQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRA 304          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 49/152 (32.24%), Postives = 72/152 (47.37%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQV-----DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            VYI N   ++D+  L +I    G     +V+ D  +GRSR F FV     E+A   + ++NG E+ GR + V   +K + +          ++ E  N       +YV NL   +  + L+K FS  G + S KV    G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSK--GFGFVCF 340          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 50/152 (32.89%), Postives = 72/152 (47.37%), Query Frame = 3
Query:  237 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVD-----LSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            VYI N   ++D+  L +I    G     +V+ D  +GRSR F FV     E+A   + ++NG E+ GR I V   +K + +          ++ E  N       +YV NL   +  + L+K F   G + SAKV    G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGV-NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSK--GFGFVCF 340          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 41/155 (26.45%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  213 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            T  +    + +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.362e-11
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  252 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 9.615e-11
Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+      A +        D+N       +YV  L KT++ + +++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.615e-11
Identity = 42/145 (28.97%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  243 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 677
            +  +P+N+  +EL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+   +P ++V       +D+N       +Y+  L +T+T + ++  FS  G++++++V     T  S G  F+ F
Sbjct:   24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PABP_ASPTN7.362e-1128.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABB_XENLA7.362e-1132.24Embryonic polyadenylate-binding protein B OS=Xenop... [more]
EPABA_XENLA7.362e-1132.89Embryonic polyadenylate-binding protein A OS=Xenop... [more]
ELAV4_HUMAN7.362e-1126.45ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV2_RAT7.362e-1128.87ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV3_HUMAN9.615e-1126.90ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV1_MOUSE9.615e-1128.97ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bp
CATCATCATCATCTTTAATACTGTCTCAACAAAATCTCATTTTTTCAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCATCGAAGACT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTGCATCATCATCATCA
TCATCGGTTGACACGCCTTCGGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGA
AGTCGCCGATTTGCCTTTGTTACGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAA
GCAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGA
AGGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAA
TCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGAAGC
TGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTG
TAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTGGAG
AGTGTTCTACTTGTTGCAACATTGTATTTGAAATGTAAAACACAGGAATT
AGAATTATTGTAGTTCTCTTTTTTATATTGGTATGATGTGAAGCCTTGCT
GGTTCTCCGGCAAGGAAGTGAACCGTTCAATTTCAACAAAGGGGATTCAG
GCACTTTGTTTGCAAGCTCCACTTCATTTGGTGGAAATCCGAAAAAATCA
AAACCCTTGTTCTGGGACCCAACGAATTTTCAAAGGTTTTTTTCCTTTAA
AGAAAAACCACGTTTTGAAATT
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