FC871267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SINAL (DNA-directed RNA polymerase subunit alpha OS=Sinapis alba GN=rpoA PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15 Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 IFIDQLE+ PRIYNCLKKSNIHTL DLLN QEDL+K+EHF I++ K+ IL KK Sbjct: 272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMEHFHIEDVKKLLDILEKK 327
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_LOBMA (DNA-directed RNA polymerase subunit alpha OS=Lobularia maritima GN=rpoA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15 Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 IFIDQLE+ PRIYNCLKKSNIHTL DLLN QEDL+KIEHF +++ K+ IL KK Sbjct: 272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHMEDVKKILDILEKK 327
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_GOSHI (DNA-directed RNA polymerase subunit alpha OS=Gossypium hirsutum GN=rpoA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15 Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 IFIDQ E+ PRIYNCLKKSNIHTL DLLN +EDLMKIEHF I++ KQ IL KK Sbjct: 274 IFIDQSELPPRIYNCLKKSNIHTLLDLLNNSREDLMKIEHFRIEDVKQILGILEKK 329
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AETGR (DNA-directed RNA polymerase subunit alpha OS=Aethionema grandiflora GN=rpoA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15 Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 IFIDQLE+ PRIYNCLKKSNIHTL DLLN QEDL+KIEHF I++ K+ IL K I Sbjct: 272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHIEDVKKILDILEKNRKFI 331
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AETCO (DNA-directed RNA polymerase subunit alpha OS=Aethionema cordifolium GN=rpoA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15 Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 IFIDQLE+ PRIYNCLKKSNIHTL DLLN QEDL+KIEHF I++ K+ IL K I Sbjct: 272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHIEDVKKILEILEKNRKFI 331
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DAUCA (DNA-directed RNA polymerase subunit alpha OS=Daucus carota GN=rpoA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHS 239 SIFIDQ E+ PRIYNCLK+SNI+TL DLLN QEDLMKIEHF I++ KQ IL K S Sbjct: 272 SIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIKDVKQILGILEKNFS 330
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PHAAN (DNA-directed RNA polymerase subunit alpha OS=Phaseolus angularis GN=rpoA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224 SIFIDQLE+ PRIYNCLK+SNIHTL +LLN QE L+KIEHF +++GK IL Sbjct: 273 SIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEXLLKIEHFRVEDGKSILDIL 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_IPOPU (DNA-directed RNA polymerase subunit alpha OS=Ipomoea purpurea GN=rpoA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 SIFIDQLE P+IYNCLKKSNI TL DLLN QEDLMKIEHF I++ KQ IL +KH Sbjct: 271 SIFIDQLEFPPKIYNCLKKSNISTLLDLLNKSQEDLMKIEHFHIEDVKQILGIL-EKH 327
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SPIOL (DNA-directed RNA polymerase subunit alpha OS=Spinacia oleracea GN=rpoA PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14 Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 FTF R IFIDQLE+ PRIYNCLKKSNIHTL DLLN QEDL+K++HF I++ KQ Sbjct: 250 FTFHNRLAEIRKNKKKIALKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMKHFRIEDVKQ 318
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_BUXMI (DNA-directed RNA polymerase subunit alpha OS=Buxus microphylla GN=rpoA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14 Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 FTF R IFIDQ E+ PR YNCLK+SNIHTL DLLN QEDLMKIEHF I++ KQ IL +KH Sbjct: 251 FTFHDRLAKQRKNKKEISFQCIFIDQSELPPRTYNCLKRSNIHTLLDLLNNSQEDLMKIEHFRIEDVKQILGIL-QKH 327 The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bpback to top |