FC871267

Overview
NameFC871267
Unique NameFC871267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SINAL (DNA-directed RNA polymerase subunit alpha OS=Sinapis alba GN=rpoA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            IFIDQLE+ PRIYNCLKKSNIHTL DLLN  QEDL+K+EHF I++ K+   IL KK
Sbjct:  272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMEHFHIEDVKKLLDILEKK 327          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_LOBMA (DNA-directed RNA polymerase subunit alpha OS=Lobularia maritima GN=rpoA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            IFIDQLE+ PRIYNCLKKSNIHTL DLLN  QEDL+KIEHF +++ K+   IL KK
Sbjct:  272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHMEDVKKILDILEKK 327          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_GOSHI (DNA-directed RNA polymerase subunit alpha OS=Gossypium hirsutum GN=rpoA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            IFIDQ E+ PRIYNCLKKSNIHTL DLLN  +EDLMKIEHF I++ KQ   IL KK
Sbjct:  274 IFIDQSELPPRIYNCLKKSNIHTLLDLLNNSREDLMKIEHFRIEDVKQILGILEKK 329          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AETGR (DNA-directed RNA polymerase subunit alpha OS=Aethionema grandiflora GN=rpoA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            IFIDQLE+ PRIYNCLKKSNIHTL DLLN  QEDL+KIEHF I++ K+   IL K    I
Sbjct:  272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHIEDVKKILDILEKNRKFI 331          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AETCO (DNA-directed RNA polymerase subunit alpha OS=Aethionema cordifolium GN=rpoA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            IFIDQLE+ PRIYNCLKKSNIHTL DLLN  QEDL+KIEHF I++ K+   IL K    I
Sbjct:  272 IFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHIEDVKKILEILEKNRKFI 331          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DAUCA (DNA-directed RNA polymerase subunit alpha OS=Daucus carota GN=rpoA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHS 239
            SIFIDQ E+ PRIYNCLK+SNI+TL DLLN  QEDLMKIEHF I++ KQ   IL K  S
Sbjct:  272 SIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIKDVKQILGILEKNFS 330          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PHAAN (DNA-directed RNA polymerase subunit alpha OS=Phaseolus angularis GN=rpoA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224
            SIFIDQLE+ PRIYNCLK+SNIHTL +LLN  QE L+KIEHF +++GK    IL
Sbjct:  273 SIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEXLLKIEHFRVEDGKSILDIL 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_IPOPU (DNA-directed RNA polymerase subunit alpha OS=Ipomoea purpurea GN=rpoA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            SIFIDQLE  P+IYNCLKKSNI TL DLLN  QEDLMKIEHF I++ KQ   IL +KH
Sbjct:  271 SIFIDQLEFPPKIYNCLKKSNISTLLDLLNKSQEDLMKIEHFHIEDVKQILGIL-EKH 327          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SPIOL (DNA-directed RNA polymerase subunit alpha OS=Spinacia oleracea GN=rpoA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            FTF  R               IFIDQLE+ PRIYNCLKKSNIHTL DLLN  QEDL+K++HF I++ KQ
Sbjct:  250 FTFHNRLAEIRKNKKKIALKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMKHFRIEDVKQ 318          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_BUXMI (DNA-directed RNA polymerase subunit alpha OS=Buxus microphylla GN=rpoA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14
Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            FTF  R               IFIDQ E+ PR YNCLK+SNIHTL DLLN  QEDLMKIEHF I++ KQ   IL +KH
Sbjct:  251 FTFHDRLAKQRKNKKEISFQCIFIDQSELPPRTYNCLKRSNIHTLLDLLNNSQEDLMKIEHFRIEDVKQILGIL-QKH 327          
The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RPOA_SINAL2.955e-1571.43DNA-directed RNA polymerase subunit alpha OS=Sinap... [more]
RPOA_LOBMA3.859e-1571.43DNA-directed RNA polymerase subunit alpha OS=Lobul... [more]
RPOA_GOSHI3.859e-1573.21DNA-directed RNA polymerase subunit alpha OS=Gossy... [more]
RPOA_AETGR5.040e-1568.33DNA-directed RNA polymerase subunit alpha OS=Aethi... [more]
RPOA_AETCO5.040e-1568.33DNA-directed RNA polymerase subunit alpha OS=Aethi... [more]
RPOA_DAUCA1.123e-1469.49DNA-directed RNA polymerase subunit alpha OS=Daucu... [more]
RPOA_PHAAN1.466e-1468.52DNA-directed RNA polymerase subunit alpha OS=Phase... [more]
RPOA_IPOPU1.466e-1472.41DNA-directed RNA polymerase subunit alpha OS=Ipomo... [more]
RPOA_SPIOL1.915e-1457.97DNA-directed RNA polymerase subunit alpha OS=Spina... [more]
RPOA_BUXMI1.915e-1456.41DNA-directed RNA polymerase subunit alpha OS=Buxus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bp
TTTTTACTTTTCCTTATAGATTGGCTAAACTAACGAAAAAGAAAAAAGAA
ATCGCATTGAAATCGATTTTTATTGACCAATTAGAAATGTCTCCCAGGAT
CTATAATTGTCTCAAAAAGTCCAATATACATACATTATTCGACCTTTTGA
ATACCCGTCAAGAAGACCTTATGAAAATTGAACACTTTCCCATACAGGAA
GGAAAACAGAAAAGGACTATTCTATAAAAGAAACACAGCAACATTTCACG
ACTGAGATAACGTAGATCACACCTACAATCACCTTTACTGCCTCGCAATT
ACCGGGCTGAGGTTATTCACTGGGTACGGACCCTGGGGCCGACACGAGAT
GGCTTACTTCTCGAACACAAGAAATATTCGCCAAGGCAAACCAATCACGG
TTTATCGGGGGAAGAATCACGTCAACTTGGCACGAGATTTTACTTACATT
GAGGATATCATGAAGGGATGTTTAGGTTCGCTGGATACCTCGGGTAAGAG
TACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTA
ATTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTG
GAGAGACACCTGAGGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGG
AAACGGCGACGTC
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