FC871267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CERDE (DNA-directed RNA polymerase subunit alpha OS=Ceratophyllum demersum GN=rpoA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 IFIDQLE+ R YNCLK+SNIHTLFDLL+ +EDLM+IEHF +++ KQ IL K Sbjct: 272 IFIDQLELPSRTYNCLKRSNIHTLFDLLSNSKEDLMRIEHFRVEDVKQILDILQK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CALFG (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13 Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 IFIDQ E+ R YNCLK+SNIHTL DLLN QEDLM+IEHF I++ KQ IL +KH I Sbjct: 274 IFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHFRIEDIKQILDIL-QKHFGI 332
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLLC (DNA-directed RNA polymerase subunit alpha OS=Solanum lycopersicum GN=rpoA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+S RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ KQ IL K Sbjct: 271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILDILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PANGI (DNA-directed RNA polymerase subunit alpha OS=Panax ginseng GN=rpoA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13 Identity = 42/78 (53.85%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 FTF + SIFIDQ E+ PRIYNCL +SNI+TL DLLN QEDLMKIEHF I++ K IL +KH Sbjct: 252 FTFHEKLTKLRKNKKKIALKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKAILGIL-EKH 328
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLTU (DNA-directed RNA polymerase subunit alpha OS=Solanum tuberosum GN=rpoA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+S RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ KQ IL K Sbjct: 271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLBU (DNA-directed RNA polymerase subunit alpha OS=Solanum bulbocastanum GN=rpoA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+S RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ KQ IL K Sbjct: 271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PLAOC (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis GN=rpoA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13 Identity = 42/81 (51.85%), Postives = 48/81 (59.26%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 FTF R IFIDQ E+ PR YNCLK+SNIHTL DL N QEDLMKIE F I++ KQ IL +KH + Sbjct: 251 FTFHDRLAKIRKNEKEIALKYIFIDQSELPPRTYNCLKRSNIHTLLDLFNNSQEDLMKIEDFRIEDVKQILGIL-QKHFTV 330
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_RANMC (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus GN=rpoA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 IFIDQ E+ R YNCLK++NIHTL DLLN QEDLMKIEHF I++ KQ I+ +KH Sbjct: 273 IFIDQSELPSRTYNCLKRANIHTLLDLLNKSQEDLMKIEHFRIEDVKQILDII-QKH 328
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PIPCE (DNA-directed RNA polymerase subunit alpha OS=Piper cenocladum GN=rpoA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 SIFIDQ E+ + YNCLKKSNIHTL DLLN QEDL+KIEHF +++ K+ IL +KH Sbjct: 273 SIFIDQSELPSKTYNCLKKSNIHTLLDLLNNSQEDLLKIEHFCMEDVKRILDIL-QKH 329
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_OENEH (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri GN=rpoA PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224 FTF + SIFIDQLE+ PRIYN LK S IHTL DLLN QEDLMK++HF I++ KQ IL Sbjct: 251 FTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLNKSQEDLMKMKHFRIEDVKQILDIL 324 The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bpback to top |