FC871267

Overview
NameFC871267
Unique NameFC871267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CERDE (DNA-directed RNA polymerase subunit alpha OS=Ceratophyllum demersum GN=rpoA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            IFIDQLE+  R YNCLK+SNIHTLFDLL+  +EDLM+IEHF +++ KQ   IL K
Sbjct:  272 IFIDQLELPSRTYNCLKRSNIHTLFDLLSNSKEDLMRIEHFRVEDVKQILDILQK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CALFG (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            IFIDQ E+  R YNCLK+SNIHTL DLLN  QEDLM+IEHF I++ KQ   IL +KH  I
Sbjct:  274 IFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHFRIEDIKQILDIL-QKHFGI 332          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLLC (DNA-directed RNA polymerase subunit alpha OS=Solanum lycopersicum GN=rpoA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+S RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ KQ   IL K
Sbjct:  271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILDILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PANGI (DNA-directed RNA polymerase subunit alpha OS=Panax ginseng GN=rpoA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 42/78 (53.85%), Postives = 49/78 (62.82%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            FTF  +              SIFIDQ E+ PRIYNCL +SNI+TL DLLN  QEDLMKIEHF I++ K    IL +KH
Sbjct:  252 FTFHEKLTKLRKNKKKIALKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKAILGIL-EKH 328          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLTU (DNA-directed RNA polymerase subunit alpha OS=Solanum tuberosum GN=rpoA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+S RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ KQ   IL K
Sbjct:  271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_SOLBU (DNA-directed RNA polymerase subunit alpha OS=Solanum bulbocastanum GN=rpoA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+S RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ KQ   IL K
Sbjct:  271 SIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PLAOC (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis GN=rpoA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 42/81 (51.85%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            FTF  R               IFIDQ E+ PR YNCLK+SNIHTL DL N  QEDLMKIE F I++ KQ   IL +KH  +
Sbjct:  251 FTFHDRLAKIRKNEKEIALKYIFIDQSELPPRTYNCLKRSNIHTLLDLFNNSQEDLMKIEDFRIEDVKQILGIL-QKHFTV 330          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_RANMC (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            IFIDQ E+  R YNCLK++NIHTL DLLN  QEDLMKIEHF I++ KQ   I+ +KH
Sbjct:  273 IFIDQSELPSRTYNCLKRANIHTLLDLLNKSQEDLMKIEHFRIEDVKQILDII-QKH 328          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PIPCE (DNA-directed RNA polymerase subunit alpha OS=Piper cenocladum GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            SIFIDQ E+  + YNCLKKSNIHTL DLLN  QEDL+KIEHF +++ K+   IL +KH
Sbjct:  273 SIFIDQSELPSKTYNCLKKSNIHTLLDLLNNSQEDLLKIEHFCMEDVKRILDIL-QKH 329          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_OENEH (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri GN=rpoA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224
            FTF  +              SIFIDQLE+ PRIYN LK S IHTL DLLN  QEDLMK++HF I++ KQ   IL
Sbjct:  251 FTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLNKSQEDLMKMKHFRIEDVKQILDIL 324          
The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RPOA_CERDE3.612e-1365.45DNA-directed RNA polymerase subunit alpha OS=Cerat... [more]
RPOA_CALFG3.612e-1365.00DNA-directed RNA polymerase subunit alpha OS=Calyc... [more]
RPOA_SOLLC4.717e-1369.64DNA-directed RNA polymerase subunit alpha OS=Solan... [more]
RPOA_PANGI4.717e-1353.85DNA-directed RNA polymerase subunit alpha OS=Panax... [more]
RPOA_SOLTU6.161e-1369.64DNA-directed RNA polymerase subunit alpha OS=Solan... [more]
RPOA_SOLBU6.161e-1369.64DNA-directed RNA polymerase subunit alpha OS=Solan... [more]
RPOA_PLAOC6.161e-1351.85DNA-directed RNA polymerase subunit alpha OS=Plata... [more]
RPOA_RANMC1.051e-1264.91DNA-directed RNA polymerase subunit alpha OS=Ranun... [more]
RPOA_PIPCE1.373e-1263.79DNA-directed RNA polymerase subunit alpha OS=Piper... [more]
RPOA_OENEH1.793e-1254.05DNA-directed RNA polymerase subunit alpha OS=Oenot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bp
TTTTTACTTTTCCTTATAGATTGGCTAAACTAACGAAAAAGAAAAAAGAA
ATCGCATTGAAATCGATTTTTATTGACCAATTAGAAATGTCTCCCAGGAT
CTATAATTGTCTCAAAAAGTCCAATATACATACATTATTCGACCTTTTGA
ATACCCGTCAAGAAGACCTTATGAAAATTGAACACTTTCCCATACAGGAA
GGAAAACAGAAAAGGACTATTCTATAAAAGAAACACAGCAACATTTCACG
ACTGAGATAACGTAGATCACACCTACAATCACCTTTACTGCCTCGCAATT
ACCGGGCTGAGGTTATTCACTGGGTACGGACCCTGGGGCCGACACGAGAT
GGCTTACTTCTCGAACACAAGAAATATTCGCCAAGGCAAACCAATCACGG
TTTATCGGGGGAAGAATCACGTCAACTTGGCACGAGATTTTACTTACATT
GAGGATATCATGAAGGGATGTTTAGGTTCGCTGGATACCTCGGGTAAGAG
TACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTA
ATTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTG
GAGAGACACCTGAGGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGG
AAACGGCGACGTC
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