FC871267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NICTO (DNA-directed RNA polymerase subunit alpha OS=Nicotiana tomentosiformis GN=rpoA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+ RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ KQ IL K Sbjct: 271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKQILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DRIGR (DNA-directed RNA polymerase subunit alpha OS=Drimys granadensis GN=rpoA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 IFIDQ E+ PR YNCLK+SNIHTL DLL+ QEDLM+IEH I++ K+ IL +KH I Sbjct: 274 IFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHLRIEDVKRILDIL-QKHFTI 332
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ILLOL (DNA-directed RNA polymerase subunit alpha OS=Illicium oligandrum GN=rpoA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12 Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 +FIDQ E+ R YNCLK+SNIHTL DLL+ QEDLM+IEHF I++ KQ IL K+ Sbjct: 272 VFIDQSELPTRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILGILQKR 327
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ATRBE (DNA-directed RNA polymerase subunit alpha OS=Atropa belladonna GN=rpoA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12 Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+ RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ KQ IL K Sbjct: 271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12 Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224 IFIDQ E+ PRIYNCLK+ NIHTLFDLLN ++LMKI+HF I++ K IL Sbjct: 274 IFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDIL 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NANDO (DNA-directed RNA polymerase subunit alpha OS=Nandina domestica GN=rpoA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 IFIDQ E+ R YNCLKKSNI+TL DLLN QEDL+KIEHF I++ K+ IL K+ Sbjct: 271 IFIDQSELPSRTYNCLKKSNINTLLDLLNKSQEDLLKIEHFRIEDVKRVLGILQKR 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_TOBAC (DNA-directed RNA polymerase subunit alpha OS=Nicotiana tabacum GN=rpoA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12 Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+ RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ K+ IL K Sbjct: 271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NICSY (DNA-directed RNA polymerase subunit alpha OS=Nicotiana sylvestris GN=rpoA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12 Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230 SIFIDQ E+ RIYNCLK SNI+TL DLLN QEDLMKIEHF ++ K+ IL K Sbjct: 271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEK 326
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSJ (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp. japonica GN=rpoA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+I+ F +Q+GKQ Sbjct: 272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSI (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp. indica GN=rpoA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+I+ F +Q+GKQ Sbjct: 272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319 The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bpback to top |