FC871267

Overview
NameFC871267
Unique NameFC871267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NICTO (DNA-directed RNA polymerase subunit alpha OS=Nicotiana tomentosiformis GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+  RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ KQ   IL K
Sbjct:  271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKQILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DRIGR (DNA-directed RNA polymerase subunit alpha OS=Drimys granadensis GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            IFIDQ E+ PR YNCLK+SNIHTL DLL+  QEDLM+IEH  I++ K+   IL +KH  I
Sbjct:  274 IFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHLRIEDVKRILDIL-QKHFTI 332          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ILLOL (DNA-directed RNA polymerase subunit alpha OS=Illicium oligandrum GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            +FIDQ E+  R YNCLK+SNIHTL DLL+  QEDLM+IEHF I++ KQ   IL K+
Sbjct:  272 VFIDQSELPTRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILGILQKR 327          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ATRBE (DNA-directed RNA polymerase subunit alpha OS=Atropa belladonna GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+  RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ KQ   IL K
Sbjct:  271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL 224
            IFIDQ E+ PRIYNCLK+ NIHTLFDLLN   ++LMKI+HF I++ K    IL
Sbjct:  274 IFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDIL 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NANDO (DNA-directed RNA polymerase subunit alpha OS=Nandina domestica GN=rpoA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            IFIDQ E+  R YNCLKKSNI+TL DLLN  QEDL+KIEHF I++ K+   IL K+
Sbjct:  271 IFIDQSELPSRTYNCLKKSNINTLLDLLNKSQEDLLKIEHFRIEDVKRVLGILQKR 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_TOBAC (DNA-directed RNA polymerase subunit alpha OS=Nicotiana tabacum GN=rpoA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+  RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ K+   IL K
Sbjct:  271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_NICSY (DNA-directed RNA polymerase subunit alpha OS=Nicotiana sylvestris GN=rpoA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*K 230
            SIFIDQ E+  RIYNCLK SNI+TL DLLN  QEDLMKIEHF  ++ K+   IL K
Sbjct:  271 SIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEK 326          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSJ (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp. japonica GN=rpoA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+I+ F +Q+GKQ
Sbjct:  272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSI (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp. indica GN=rpoA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+I+ F +Q+GKQ
Sbjct:  272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319          
The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RPOA_NICTO1.793e-1267.86DNA-directed RNA polymerase subunit alpha OS=Nicot... [more]
RPOA_DRIGR1.793e-1261.67DNA-directed RNA polymerase subunit alpha OS=Drimy... [more]
RPOA_ILLOL2.341e-1262.50DNA-directed RNA polymerase subunit alpha OS=Illic... [more]
RPOA_ATRBE2.341e-1267.86DNA-directed RNA polymerase subunit alpha OS=Atrop... [more]
RPOA_CUCSA3.058e-1264.15DNA-directed RNA polymerase subunit alpha OS=Cucum... [more]
RPOA_NANDO3.993e-1264.29DNA-directed RNA polymerase subunit alpha OS=Nandi... [more]
RPOA_TOBAC5.216e-1266.07DNA-directed RNA polymerase subunit alpha OS=Nicot... [more]
RPOA_NICSY5.216e-1266.07DNA-directed RNA polymerase subunit alpha OS=Nicot... [more]
RPOA_ORYSJ1.518e-1164.58DNA-directed RNA polymerase subunit alpha OS=Oryza... [more]
RPOA_ORYSI1.518e-1164.58DNA-directed RNA polymerase subunit alpha OS=Oryza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3DH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bp
TTTTTACTTTTCCTTATAGATTGGCTAAACTAACGAAAAAGAAAAAAGAA
ATCGCATTGAAATCGATTTTTATTGACCAATTAGAAATGTCTCCCAGGAT
CTATAATTGTCTCAAAAAGTCCAATATACATACATTATTCGACCTTTTGA
ATACCCGTCAAGAAGACCTTATGAAAATTGAACACTTTCCCATACAGGAA
GGAAAACAGAAAAGGACTATTCTATAAAAGAAACACAGCAACATTTCACG
ACTGAGATAACGTAGATCACACCTACAATCACCTTTACTGCCTCGCAATT
ACCGGGCTGAGGTTATTCACTGGGTACGGACCCTGGGGCCGACACGAGAT
GGCTTACTTCTCGAACACAAGAAATATTCGCCAAGGCAAACCAATCACGG
TTTATCGGGGGAAGAATCACGTCAACTTGGCACGAGATTTTACTTACATT
GAGGATATCATGAAGGGATGTTTAGGTTCGCTGGATACCTCGGGTAAGAG
TACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTA
ATTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTG
GAGAGACACCTGAGGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGG
AAACGGCGACGTC
back to top