FC871267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSA (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa GN=rpoA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+I+ F +Q+GKQ Sbjct: 272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYNI (DNA-directed RNA polymerase subunit alpha OS=Oryza nivara GN=rpoA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+I+ F +Q+GKQ Sbjct: 272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_LOLPR (DNA-directed RNA polymerase subunit alpha OS=Lolium perenne GN=rpoA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+I+ F +++GKQ Sbjct: 274 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFHMEDGKQ 321
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PHAAO (DNA-directed RNA polymerase subunit alpha OS=Phalaenopsis aphrodite subsp. formosana GN=rpoA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQ E+S R YNCLK+SNIHTL DLL+ QEDLMK+E+F ++ KQ Sbjct: 272 IFIDQSELSSRTYNCLKRSNIHTLLDLLSHSQEDLMKMEYFRTEDVKQ 319
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CHLSC (DNA-directed RNA polymerase subunit alpha OS=Chloranthus spicatus GN=rpoA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245 IFIDQ E+ PR YN LK+SNI+TL DLL+ QED +KIEHF I++ KQ IL +KH I Sbjct: 274 IFIDQSELPPRTYNYLKRSNINTLLDLLSNSQEDFLKIEHFRIEDVKQILDIL-QKHFTI 332
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AGRST (DNA-directed RNA polymerase subunit alpha OS=Agrostis stolonifera GN=rpoA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 FTF R IFIDQLE+ R YNCLK++NIHTL DLL+ +EDLM+IE F +++ KQ Sbjct: 251 FTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIESFRMEDRKQ 319
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_JASNU (DNA-directed RNA polymerase subunit alpha OS=Jasminum nudiflorum GN=rpoA PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 3 Query: 63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236 SIFIDQ E+ P++YNCLK SN++TL DLLN QEDLMK+EH +++ IL +KH Sbjct: 275 SIFIDQSEL-PKVYNCLKGSNLYTLLDLLNKSQEDLMKMEHLRLEDVNHILVILARKH 331
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DIOEL (DNA-directed RNA polymerase subunit alpha OS=Dioscorea elephantipes GN=rpoA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209 IFIDQLE+ R YNCLK+SNIHTL DLL+ QE+L+K+E+F I++ KQ Sbjct: 272 IFIDQLELPSRTYNCLKRSNIHTLLDLLSKGQENLIKMEYFHIEDVKQ 319 The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bpback to top |