FC871267

Overview
NameFC871267
Unique NameFC871267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYSA (DNA-directed RNA polymerase subunit alpha OS=Oryza sativa GN=rpoA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+I+ F +Q+GKQ
Sbjct:  272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_ORYNI (DNA-directed RNA polymerase subunit alpha OS=Oryza nivara GN=rpoA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+I+ F +Q+GKQ
Sbjct:  272 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQ 319          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_LOLPR (DNA-directed RNA polymerase subunit alpha OS=Lolium perenne GN=rpoA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+I+ F +++GKQ
Sbjct:  274 IFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFHMEDGKQ 321          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_PHAAO (DNA-directed RNA polymerase subunit alpha OS=Phalaenopsis aphrodite subsp. formosana GN=rpoA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQ E+S R YNCLK+SNIHTL DLL+  QEDLMK+E+F  ++ KQ
Sbjct:  272 IFIDQSELSSRTYNCLKRSNIHTLLDLLSHSQEDLMKMEYFRTEDVKQ 319          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CHLSC (DNA-directed RNA polymerase subunit alpha OS=Chloranthus spicatus GN=rpoA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKHSNI 245
            IFIDQ E+ PR YN LK+SNI+TL DLL+  QED +KIEHF I++ KQ   IL +KH  I
Sbjct:  274 IFIDQSELPPRTYNYLKRSNINTLLDLLSNSQEDFLKIEHFRIEDVKQILDIL-QKHFTI 332          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_AGRST (DNA-directed RNA polymerase subunit alpha OS=Agrostis stolonifera GN=rpoA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            FTF  R               IFIDQLE+  R YNCLK++NIHTL DLL+  +EDLM+IE F +++ KQ
Sbjct:  251 FTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIESFRMEDRKQ 319          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_JASNU (DNA-directed RNA polymerase subunit alpha OS=Jasminum nudiflorum GN=rpoA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   63 SIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KKH 236
            SIFIDQ E+ P++YNCLK SN++TL DLLN  QEDLMK+EH  +++      IL +KH
Sbjct:  275 SIFIDQSEL-PKVYNCLKGSNLYTLLDLLNKSQEDLMKMEHLRLEDVNHILVILARKH 331          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_DIOEL (DNA-directed RNA polymerase subunit alpha OS=Dioscorea elephantipes GN=rpoA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   66 IFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQ 209
            IFIDQLE+  R YNCLK+SNIHTL DLL+  QE+L+K+E+F I++ KQ
Sbjct:  272 IFIDQLELPSRTYNCLKRSNIHTLLDLLSKGQENLIKMEYFHIEDVKQ 319          
The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RPOA_ORYSA1.518e-1164.58DNA-directed RNA polymerase subunit alpha OS=Oryza... [more]
RPOA_ORYNI1.518e-1164.58DNA-directed RNA polymerase subunit alpha OS=Oryza... [more]
RPOA_LOLPR3.381e-1162.50DNA-directed RNA polymerase subunit alpha OS=Loliu... [more]
RPOA_PHAAO4.415e-1166.67DNA-directed RNA polymerase subunit alpha OS=Phala... [more]
RPOA_CHLSC4.415e-1160.00DNA-directed RNA polymerase subunit alpha OS=Chlor... [more]
RPOA_AGRST4.415e-1149.28DNA-directed RNA polymerase subunit alpha OS=Agros... [more]
RPOA_JASNU7.531e-1156.90DNA-directed RNA polymerase subunit alpha OS=Jasmi... [more]
RPOA_DIOEL9.836e-1164.58DNA-directed RNA polymerase subunit alpha OS=Diosc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bp
TTTTTACTTTTCCTTATAGATTGGCTAAACTAACGAAAAAGAAAAAAGAA
ATCGCATTGAAATCGATTTTTATTGACCAATTAGAAATGTCTCCCAGGAT
CTATAATTGTCTCAAAAAGTCCAATATACATACATTATTCGACCTTTTGA
ATACCCGTCAAGAAGACCTTATGAAAATTGAACACTTTCCCATACAGGAA
GGAAAACAGAAAAGGACTATTCTATAAAAGAAACACAGCAACATTTCACG
ACTGAGATAACGTAGATCACACCTACAATCACCTTTACTGCCTCGCAATT
ACCGGGCTGAGGTTATTCACTGGGTACGGACCCTGGGGCCGACACGAGAT
GGCTTACTTCTCGAACACAAGAAATATTCGCCAAGGCAAACCAATCACGG
TTTATCGGGGGAAGAATCACGTCAACTTGGCACGAGATTTTACTTACATT
GAGGATATCATGAAGGGATGTTTAGGTTCGCTGGATACCTCGGGTAAGAG
TACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTA
ATTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTG
GAGAGACACCTGAGGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGG
AAACGGCGACGTC
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