DY257278

Overview
NameDY257278
Unique NameDY257278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.815e-23
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  145 VEKENVSAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 561
            V  E V  G S  +C     A+V     L      E  +  + +   ++P   GE +I C+++ T+P+V+  +G K++ LS E Y LK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G A+A
Sbjct:  270 VHMEQVDVGSSLTLCKGGCEAIVDTGTSLIVGPVDE--VRELQKAIGAVPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  283 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 564
            ++P   GE +I C+++ ++P ++F +G + + L PE+YILK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA+AA
Sbjct:  312 AVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  283 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 564
            ++P   GE +I C+++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G AEAA
Sbjct:  295 AVPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  283 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 561
            ++P   GE +I C+++ ++P V   +G K + L P++YILK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA A
Sbjct:  315 AVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.878e-20
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  253 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA-EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 555
            V+  I      +P   GE  ++C +IP++PN++F +G + F+L  + YIL+   G     C+SGFM  D+P P GPLWILGDVF+G +++VFD G  R+GFA
Sbjct:  291 VIKKIQHKIGGIPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.321e-20
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  145 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 558
            ++  +V+ G +     CE A+V     L    TKE  +  +     + P   G+ +I CD+I ++P V+  +G K + L+ EQY+ K       +C+SGF   D+PPP GPLWILGDVF+G Y+TVFD     +GFA+
Sbjct:  262 MDSVDVANGLTLCKGGCE-AIVDTGTSLITGPTKE--VKELQTAIGAKPLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.590e-19
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  145 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL----RIGFAEA 561
            +E+  V  G +     C  A++     L    T+E  +  ++     +P   GE II C  IP +P VSF +G   FNL+   Y+++T      +C+SGF A D+PPP GP WILGDVF+G Y  VFD G +    R+G A A
Sbjct:  262 MERVKVGPGLTLCAKGCA-AILDTGTSLITGPTEE--IRALHAAIGGIPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.077e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  247 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 555
            E++ +YI      + N  GE  + C  +  MP+V+FTI    ++L+PEQY+L+ G G    C SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.346e-18
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 555
            G+  +DC  +  MP V+FTI    + ++P+QY L+ G G   VC SGF   D+PPP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of DY257278 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.680e-18
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  145 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIG 549
            +E   V  G S     C  A++     L    ++E  +  +N+     P   G+  I C + PT+P VSF +G   FNL+ + Y++K  +    +C+ GF A D+P P GPLWILGDVF+G Y  VFD G   +G
Sbjct:  257 MESVKVGTGLSLCAQGCS-AILDTGTSLITGPSEE--IRALNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of DY257278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CATD_CANFA1.815e-2340.00Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_RAT5.281e-2348.94Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN5.281e-2351.06Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_MOUSE6.897e-2349.46Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL1.878e-2044.12Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATD_CHICK9.321e-2037.68Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
NAPSA_HUMAN1.590e-1937.76Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RANCA2.077e-1946.60Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATEA_XENLA1.346e-1850.59Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
NAPSA_MOUSE6.680e-1836.30Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DC10FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257278 ID=DY257278; Name=DY257278; organism=Citrus sinensis; type=EST; length=790bp
GAGTGTAAGCTAGTTGTTTCCCAGTACGGGGATTTAATATGGGATCTTTT
AGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTG
CTTTCAATGGCGCTGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAG
AAGGAAAACGTATCAGCCGGGGATAGTGCAGTGTGCAGTGCTTGTGAAAT
GGCCGTGGTTTGGGTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGA
AAGTACTCAGTTATATAAATGAGCTCTGCGACAGCCTGCCAAATCCGATG
GGCGAATCAATTATTGACTGTGATCGCATTCCAACCATGCCAAATGTTTC
ATTCACCATCGGAGACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTC
TGAAAACCGGAGAAGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCT
TTCGACCTGCCTCCTCCAAGGGGTCCTCTGTGGATTCTGGGAGATGTATT
CATGGGGGTTTATCACACTGTTTTCGACTCTGGTAAGCTCCGGATCGGCT
TTGCTGAGGCTGCGTAATGATCTACTTACTGTCAAGTTTTTATGTAGTAG
CAGCGATCATCACCTGCTCATATGAGGAGGAGGGTTCTAGAATGTAGATT
ATGGTTTTCATGTACTGTAAAACGATCAGTATGCTTTTATGCATAACTAT
CTTCATCATCACCACAGATGATATGCTGATATATACTTATGTAAAATCCT
ATCATCCTATGTTTAAAGTACTTTAATTTTATGATAATCT
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