DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.484e-41
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED+ RHAGDL N+ VG+DGTA+FT+ D QIPL+GP SIIGR VV HADPDDLG+GGHEL  TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 9.484e-41
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 9.484e-41
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.233e-40
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GK HG PED  RHAGDL N+ VGDDGTATFT+ D+QIPLSGPNSI+GRA+V HADPDDLG+GGHEL+ +TGNAGGRV+CGII L G
Sbjct:   67 GKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152

HSP 2 Score: 37.7354 bits (86), Expect = 1.233e-40
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+  NGCMSTGPHFNP  K
Sbjct:   49 LGDNTNGCMSTGPHFNPDGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.233e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.710e-40
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED+ RHAGDL NV  G+DG A   VVD+QIPL+GPNSIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 2.710e-40
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 23.8682 bits (50), Expect = 2.710e-40
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFH+HAL
Sbjct:   40 GLHGFHIHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.710e-40
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED+ RHAGDL NV  G+DG A   VVD+QIPL+GPNSIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 2.710e-40
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 23.8682 bits (50), Expect = 2.710e-40
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFH+HAL
Sbjct:   40 GLHGFHIHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.523e-40
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     GKEHG P DD RHAGDL N+ VG+DGTA+FT+ D QIPL+G NS+IGRAVV H DPDDLG+GGHEL+ +TGNAGGRV+CGII L G
Sbjct:   61 PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

HSP 2 Score: 41.9726 bits (97), Expect = 3.523e-40
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 3.523e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.523e-40
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GK+HG P+D+ RHAGDL NV VG+DGTA FT+VD QIPL G  SIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   68 GKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153

HSP 2 Score: 38.5058 bits (88), Expect = 3.523e-40
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NP  K
Sbjct:   50 LGDTTNGCMSTGPHYNPHGK 69

HSP 3 Score: 28.1054 bits (61), Expect = 3.523e-40
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            GPHGFHVHAL
Sbjct:   41 GPHGFHVHAL 50
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.956e-40
Identity = 66/92 (71.74%), Postives = 73/92 (79.35%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     G EHG PED+ RHAGDL NV VG+DGT    +VD+QIPLSG NSIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   61 PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 5.956e-40
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPA 267
            LG+T NGCMSTGPHFNPA
Sbjct:   49 LGDTTNGCMSTGPHFNPA 66

HSP 3 Score: 24.2534 bits (51), Expect = 5.956e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.309e-39
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GK+HG PED  RHAGDL N+ VGDDGTATFT+ D QIPLSGPNSI+GRAVV HADPD LG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 36.1946 bits (82), Expect = 1.309e-39
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARKR 276
            LG+T NG MSTGPHFNP  K+
Sbjct:   49 LGDTTNGSMSTGPHFNPDGKQ 69

HSP 3 Score: 24.2534 bits (51), Expect = 1.309e-39
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.309e-39
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P    LGKEHG P DD RHAGDL NV VG DGT  F++ D+QIPLSGP+SI+GRAVV HADPDDLG+GGHEL+ +TGNAGGR++CG++ L G
Sbjct:   63 PHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154

HSP 2 Score: 40.0466 bits (92), Expect = 1.309e-39
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   51 LGDTTNGCMSTGPHFNPLGK 70

HSP 3 Score: 24.2534 bits (51), Expect = 1.309e-39
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   42 GLHGFHVHAL 51
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.388e-38
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 2 
Query:  275 EHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            EHG PED+ RHAGDL NVNVGDDGT +F++ D+QIPL+GPNSIIGRAVV HAD DDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   69 EHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 35.039 bits (79), Expect = 1.388e-38
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNP 264
            LG+T NGC+STG HFNP
Sbjct:   49 LGDTTNGCLSTGAHFNP 65

HSP 3 Score: 24.2534 bits (51), Expect = 1.388e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_CAPAN9.484e-4175.58Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_BRAOC1.233e-4076.74Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC1_ORYSJ2.710e-4076.74Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI2.710e-4076.74Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_IPOBA3.523e-4069.57Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_SOLCS3.523e-4075.58Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_ANACO5.956e-4071.74Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC2_BRAJU1.309e-3977.91Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PINSY1.309e-3968.48Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_SOYBN1.388e-3877.38Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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