DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.936e-14
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  290 EDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSG--PNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            ED+IRHAGDL N+    +G A       QI      PNS++GRA+V H   DDLG+GGHEL+ +TGNAGGR++CG++ L
Sbjct:  121 EDEIRHAGDLGNIVANAEGVAECRQ-SWQIRYHSLRPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.827e-14
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHAD 433
            KEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD
Sbjct:   60 KEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113

HSP 2 Score: 35.8094 bits (81), Expect = 3.827e-14
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   42 GDNTNGCMSSGPHFNPRNK 60

HSP 3 Score: 21.1718 bits (43), Expect = 3.827e-14
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.827e-14
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHAD 433
            KEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD
Sbjct:   60 KEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113

HSP 2 Score: 35.8094 bits (81), Expect = 3.827e-14
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   42 GDNTNGCMSSGPHFNPRNK 60

HSP 3 Score: 21.1718 bits (43), Expect = 3.827e-14
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.827e-14
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHAD 433
            KEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD
Sbjct:   60 KEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113

HSP 2 Score: 35.8094 bits (81), Expect = 3.827e-14
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   42 GDNTNGCMSSGPHFNPRNK 60

HSP 3 Score: 21.1718 bits (43), Expect = 3.827e-14
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.951e-14
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHAD 433
            KEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD
Sbjct:   60 KEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113

HSP 2 Score: 35.4242 bits (80), Expect = 4.951e-14
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   42 GDNTNGCMSSGPHFNPRSK 60

HSP 3 Score: 21.1718 bits (43), Expect = 4.951e-14
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.287e-14
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHAD 433
            KEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD
Sbjct:   60 KEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113

HSP 2 Score: 34.6538 bits (78), Expect = 8.287e-14
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPH+NP  K
Sbjct:   42 GDNTNGCMSSGPHYNPRNK 60

HSP 3 Score: 21.1718 bits (43), Expect = 8.287e-14
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.470e-13
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            P      + HGP     RHAGDL N+ VG  G A F        L   +  IGRA+V HA+ DDLG+   E + TTGN+G R++C  I
Sbjct:   92 PHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLACATI 179

HSP 2 Score: 28.1054 bits (61), Expect = 1.470e-13
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G   N C+  GPHFNP  +R
Sbjct:   81 GGLGNMCLEAGPHFNPFNQR 100
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.200e-12
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVS 502
            H  P D  RH GDL NV       A   + D  + L+GP SIIGR +V H   DDLG+GG++ +  TGNAGGR++
Sbjct:   72 HAGPTDKDRHVGDLGNV-------AKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139

HSP 2 Score: 22.7126 bits (47), Expect = 1.200e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:  186 GPHGFHVHA 212
            G HGFHVHA
Sbjct:   42 GLHGFHVHA 50
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 3.368e-12
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  302 RHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            +H GD  N  V D     +        L+GP+SI+GRAVV HA  DDLG+GG++ +   GNAG R++C ++ + G
Sbjct:  141 QHPGDFGNFAVRDGSLWRYRA-GLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCG 214

HSP 2 Score: 29.6462 bits (65), Expect = 3.368e-12
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+   GC STGPH+NP
Sbjct:  119 GDLSQGCESTGPHYNP 134
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.614e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:  302 RHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            +H GD  N  V D G      +     L+GP+SI+GRAVV HA  DDLG+GG++ +   GNAG R++C ++
Sbjct:  148 QHPGDFGNFVVRD-GRLWKHRMGLATSLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVV 217

HSP 2 Score: 29.6462 bits (65), Expect = 1.614e-11
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+   GC STGPH+NP
Sbjct:  126 GDLSQGCESTGPHYNP 141
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODCP_POPTM2.936e-1451.90Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC_DROPE3.827e-1450.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB3.827e-1450.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI3.827e-1450.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROOB4.951e-1450.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMD8.287e-1450.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_SCHMA1.470e-1342.05Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODC_LAMCR1.200e-1246.67Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODE_HUMAN3.368e-1241.33Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODE_RAT1.614e-1143.66Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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