DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.388e-38
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            KEHG PED+ RHAGDL NV VG+DGTA FT+VD QIPL G  SIIGRAVV HADPDDLG+GGHEL+ +TGNAGGR++CG I L G
Sbjct:   68 KEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152

HSP 2 Score: 40.4318 bits (93), Expect = 1.388e-38
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGC+STGPH+NPA K
Sbjct:   49 LGDTTNGCLSTGPHYNPANK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.388e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.388e-38
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     GKEHG PED  RHAGDL NV VG+DGT  FTV D+QIPL+G NS++GRAVV HAD DDLG+GGHEL+ TTGNAGGR++CG+I L
Sbjct:   61 PHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGL 150

HSP 2 Score: 41.9726 bits (97), Expect = 1.388e-38
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.388e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.804e-38
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            KEHG PED+ RHAGDL NV  G DG A   V D+QIPL+GPNSIIGRAVV HADPDDLG+GGHEL+ +TGNAGGRV+CGII L G
Sbjct:   68 KEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

HSP 2 Score: 41.2022 bits (95), Expect = 1.804e-38
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPASK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.804e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.804e-38
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            KEHG PED+ RHAGDL NV  G DG A   V D+QIPL+GPNSIIGRAVV HADPDDLG+GGHEL+ +TGNAGGRV+CGII L G
Sbjct:   68 KEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

HSP 2 Score: 41.2022 bits (95), Expect = 1.804e-38
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPASK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.804e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.805e-38
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P    +GKEHG PED+ RHAGDL NV  G+DG     + D+QIPL+GP+SIIGRAVV HADPDDLG+GGHEL+ +TGNAGGRV+CGII L G
Sbjct:   60 PHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151

HSP 2 Score: 40.4318 bits (93), Expect = 1.805e-38
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   48 LGDTTNGCMSTGPHFNPVGK 67

HSP 3 Score: 24.2534 bits (51), Expect = 1.805e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   39 GLHGFHVHAL 48
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.229e-37
Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     GKEHG P+D+ RHAGDL N+  G DG A   V D+QIPL+G +SIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   61 PHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.4318 bits (93), Expect = 3.229e-37
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   49 LGDTTNGCMSTGPHFNPTGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 3.229e-37
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.366e-33
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PED+ RHAGDL N+N   DG A  T+VDNQIPL+GPNS++GRA V H   DDLG+GGHEL+ TTGNAGGR++CG+I L
Sbjct:  133 HGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213

HSP 2 Score: 36.1946 bits (82), Expect = 2.366e-33
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGC+STGPHFNP
Sbjct:  113 GDTTNGCISTGPHFNP 128

HSP 3 Score: 23.8682 bits (50), Expect = 2.366e-33
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            GPHGFH+H
Sbjct:  103 GPHGFHLH 110
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.990e-33
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG PED++RHAGDL N+    DG A  T+VDNQIPL+GPNS++GRA+V H   DDLG+GGHEL+ TTGNAGGR++CG++ L
Sbjct:  137 KTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219

HSP 2 Score: 39.6614 bits (91), Expect = 3.990e-33
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGCMSTGPHFNP +K
Sbjct:  119 GDTTNGCMSTGPHFNPDKK 137

HSP 3 Score: 20.7866 bits (42), Expect = 3.990e-33
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:  109 GKHGFHLH 116
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.807e-33
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PEDD+RHAGDL N+  G DG A  T+VDNQIPLSGP+S+IGRA+V H   DDLG+GGHEL+ TTGNAGGR++CG++ L
Sbjct:   58 HGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138

HSP 2 Score: 35.039 bits (79), Expect = 6.807e-33
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPAR 270
            G+T NGCMSTG HFNP +
Sbjct:   38 GDTTNGCMSTGSHFNPKK 55

HSP 3 Score: 20.7866 bits (42), Expect = 6.807e-33
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   28 GKHGFHLH 35
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.462e-32
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            G  HG PED+ RHAGDL N+    DG A  T+VDNQIPL+GPN+++GRA V H   DDLG+GGHEL+ +TGNAGGR++CG++ L
Sbjct:  134 GNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217

HSP 2 Score: 36.1946 bits (82), Expect = 5.462e-32
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGC+STGPHFNP
Sbjct:  117 GDTTNGCISTGPHFNP 132

HSP 3 Score: 24.6386 bits (52), Expect = 5.462e-32
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  159 DVKYYLVDSGPHGFHVH 209
            +VK   +  GPHGFH+H
Sbjct:   98 NVKITGLTPGPHGFHLH 114
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_PANGI1.388e-3874.12Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_ZANAE1.388e-3868.89Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC5_MAIZE1.804e-3874.12Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC4_MAIZE1.804e-3874.12Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC2_MAIZE1.805e-3867.39Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC2_ORYSJ3.229e-3767.39Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODCP_ARATH2.366e-3366.67Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_SPIOL3.990e-3363.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_PINSY6.807e-3367.90Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_SOLCS5.462e-3260.71Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
back to top