DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.289e-31
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            G  HG P D++RHAGDL N+     G A  T+VDNQIPLSGPNS++GRA+V H   DDLG+GGHEL+ TTGNAGGR++CG++ L
Sbjct:  133 GLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216

HSP 2 Score: 37.7354 bits (86), Expect = 1.289e-31
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGCMSTGPHFNP
Sbjct:  116 GDTTNGCMSTGPHFNP 131
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.036e-31
Identity = 58/90 (64.44%), Postives = 64/90 (71.11%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P D  RHAGDL NV  G DG A  +V D QIPLSG +SI+GRAVV HAD DDLG+ GHEL+ TTGNAG RV CGII L
Sbjct:   63 PHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGL 152

HSP 2 Score: 38.891 bits (89), Expect = 2.036e-31
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGC STGPHFNP +K
Sbjct:   51 LGDTTNGCNSTGPHFNPLKK 70

HSP 3 Score: 23.8682 bits (50), Expect = 2.036e-31
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFH+HAL
Sbjct:   42 GLHGFHIHAL 51
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.625e-31
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            G  HG PEDD+RHAGDL N+    +G A  T+VD QIPLSGPN++IGRA+V H   DDLG+GGHEL+ TTGNAGGR++CG++ L
Sbjct:  126 GMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209

HSP 2 Score: 34.6538 bits (78), Expect = 2.625e-31
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGCMSTG HFNP
Sbjct:  109 GDTTNGCMSTGAHFNP 124

HSP 3 Score: 20.4014 bits (41), Expect = 2.625e-31
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   99 GNHGFHLH 106
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-31
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PED+IRHAGDL N+    +G A  T+VDNQIPL+GPNS++GRA+V H   DDLG+GGHEL+ +TGNAGGR++CG++ L
Sbjct:  119 HGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199

HSP 2 Score: 36.1946 bits (82), Expect = 4.834e-31
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGC+STGPHFNP
Sbjct:   99 GDTTNGCISTGPHFNP 114
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.294e-31
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PED+IRHAGDL N+    +G A  T+VDNQIPL+GPNS+IGRA+V H   DDLG+GGHEL+ +TGNAGGR++CG++ L
Sbjct:  119 HGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199

HSP 2 Score: 36.1946 bits (82), Expect = 6.294e-31
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGC+STGPHFNP
Sbjct:   99 GDTTNGCISTGPHFNP 114
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.278e-30
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRV-SC 505
            P     GKEHG P+D+ RHAGDL N+  G DG A   V D+QIPL+G +SIIGRAVV HADPDDLG+GGHEL+ TTGN+   + SC
Sbjct:   27 PHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSC 112

HSP 2 Score: 40.4318 bits (93), Expect = 1.278e-30
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   15 LGDTTNGCMSTGPHFNPTGK 34

HSP 3 Score: 23.0978 bits (48), Expect = 1.278e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3 
Query:  192 HGFHVHAL 215
            HGFHVHAL
Sbjct:    8 HGFHVHAL 15
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.389e-30
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG P D+IRHAGDL N+    DG A  T+VDNQIPL+GPNS++GRA+V H   DDLG+GGHEL+ TTGNAGGR++CG++ L
Sbjct:  134 HGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214

HSP 2 Score: 34.6538 bits (78), Expect = 1.389e-30
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGCMSTG HFNP
Sbjct:  114 GDTTNGCMSTGAHFNP 129
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.355e-30
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PED++RHAGDL N+    +G A  T+VD QIPLSGPNS++GRA V H   DDLG+GGHEL+ +TGNAGGR++CG++ L
Sbjct:  128 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208

HSP 2 Score: 36.1946 bits (82), Expect = 2.355e-30
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+T NGC+STGPHFNP
Sbjct:  108 GDTTNGCISTGPHFNP 123
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.400e-28
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L KEHG P D+ RH GDL N+    DG     + D++I L G NSI+GR VV HADPDDLG+GGHEL+ +TGNAG R+ CG+I +
Sbjct:   61 PHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150

HSP 2 Score: 35.8094 bits (81), Expect = 1.400e-28
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   50 GDNTNGCMSSGPHFNPLNK 68

HSP 3 Score: 22.7126 bits (47), Expect = 1.400e-28
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 3 
Query:  177 VDSGPHGFHVH 209
            ++ G HGFHVH
Sbjct:   37 LNKGQHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.364e-28
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            GKEHG P D+ RH GDL N+    DG     + D +I L G NSIIGR VV HADPDDLG+GGHEL+ TTGNAG R+ CG+I +
Sbjct:   59 GKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142

HSP 2 Score: 35.039 bits (79), Expect = 2.364e-28
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   42 GDNTNGCMSSGPHFNPQGK 60

HSP 3 Score: 21.1718 bits (43), Expect = 2.364e-28
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   32 GLHGFHVH 39
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODCP_PETHY1.289e-3161.90Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODC2_MESCR2.036e-3164.44Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_VITVI2.625e-3163.10Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_PEA4.834e-3162.96Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_MEDSA6.294e-3164.20Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODC_ASPJA1.278e-3061.63Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODCP_SOLLC1.389e-3064.20Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ORYSJ2.355e-3061.73Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODC_CHYAM1.400e-2854.44Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_DROBS2.364e-2859.52Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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