DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.586e-26
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     GKEHG P D+ RH GDL N+    D      + D++I L G +SIIGR VV HAD DDLGQGGHEL+ +TGNAG R+ CG+I +
Sbjct:   61 PHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150

HSP 2 Score: 34.6538 bits (78), Expect = 2.586e-26
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   50 GDNTNGCMSSGPHFNPYGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 2.586e-26
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GLHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.652e-26
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     GKEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD DDLG+GGHEL+ +TGNAG R+ CG+I +
Sbjct:   61 PHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150

HSP 2 Score: 34.6538 bits (78), Expect = 5.652e-26
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   50 GDNTNGCMSSGPHFNPYGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 5.652e-26
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GLHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.652e-26
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     GKEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD DDLG+GGHEL+ +TGNAG R+ CG+I +
Sbjct:   61 PHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150

HSP 2 Score: 34.6538 bits (78), Expect = 5.652e-26
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   50 GDNTNGCMSSGPHFNPYGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 5.652e-26
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GLHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.335e-26
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 2 
Query:  278 HGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            HG PEDDIRH GDL N+     G AT  + D  I L+G +SIIGRAVV HA  DDLG+GGHE + TTG+AGGR+SCG+I +
Sbjct:   69 HGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149

HSP 2 Score: 28.4906 bits (62), Expect = 7.335e-26
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S+G HFNP ++
Sbjct:   49 GDLTNGCTSSGGHFNPFKQ 67

HSP 3 Score: 21.557 bits (44), Expect = 7.335e-26
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   39 GKHGFHIH 46
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 9.520e-26
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV  G DG A  ++ D+ I LSG NSIIGR +V H  PDDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   62 PHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151

HSP 2 Score: 31.187 bits (69), Expect = 9.520e-26
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   51 GDNTQGCTSAGPHFNPLSKK 70

HSP 3 Score: 21.9422 bits (45), Expect = 9.520e-26
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   41 GKHGFHVH 48
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.535e-25
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            GKEHG P D+ RH GDL N+    D     ++ D++I L G +SIIGR VV HAD DDLG+GGHEL+ +TGNAG R+ CG+I +
Sbjct:   67 GKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150

HSP 2 Score: 34.6538 bits (78), Expect = 1.535e-25
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGCMS+GPHFNP  K
Sbjct:   50 GDNTNGCMSSGPHFNPHGK 68
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.080e-25
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     G  HG P D  RH GDL N+    DG     + D  I L G NSI+GR +V HADPDDLG+GGHEL+ TTGNAG R+ CG+I +
Sbjct:   61 PHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150

HSP 2 Score: 31.5722 bits (70), Expect = 2.080e-25
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+  NGC S GPHFNP
Sbjct:   50 GDNTNGCTSAGPHFNP 65

HSP 3 Score: 21.1718 bits (43), Expect = 2.080e-25
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GLHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.597e-25
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGII 514
            P      K HG P D++RH GDL N+  G DGTA   + D  + L GPNSIIGR++V HAD DDLG+G     + +  TGNAGGRV+CGI+
Sbjct:  105 PHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIV 195

HSP 2 Score: 35.4242 bits (80), Expect = 7.597e-25
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGC+S GPHFNP  K
Sbjct:   94 GDTTNGCISAGPHFNPYNK 112

HSP 3 Score: 21.1718 bits (43), Expect = 7.597e-25
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   84 GLHGFHVH 91
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.670e-24
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGIIDLPGGS 532
            P      K HG   D+IRH GDL N+  G DGTA  ++ D  I L GPNSIIGR++V HAD DDLG+G     + +  TGNAG RV+CGI+ +   S
Sbjct:   62 PHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAIGAAS 158

HSP 2 Score: 35.4242 bits (80), Expect = 1.670e-24
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGC+S GPHFNP  K
Sbjct:   51 GDTTNGCISAGPHFNPYNK 69

HSP 3 Score: 20.7866 bits (42), Expect = 1.670e-24
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   41 GLHGFHIH 48
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.672e-24
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K+HG P+D  RH GDL NV  G DG AT  + D+ I LSG +SIIGR +V H  PDDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   69 KKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151

HSP 2 Score: 31.187 bits (69), Expect = 1.672e-24
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   51 GDNTQGCTSAGPHFNPESKK 70

HSP 3 Score: 21.9422 bits (45), Expect = 1.672e-24
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   41 GDHGFHVH 48
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_DROMA2.586e-2653.33Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROYA5.652e-2652.22Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR5.652e-2652.22Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_HALRO7.335e-2660.49Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CAVPO9.520e-2653.33Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_DROER1.535e-2554.76Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_CERCA2.080e-2552.22Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODE_BRUPA7.597e-2551.65Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_ONCVO1.670e-2449.48Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_PIG1.672e-2455.42Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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