DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.811e-24
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGIIDLPGGS 532
            P      K HG P D++RH GDL N+  G DGTA   + D  + L GPNSIIGR++V HAD DDLG+G     + +  TGNAG RV+CGI+ +   S
Sbjct:   62 PHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAVSAAS 158

HSP 2 Score: 35.4242 bits (80), Expect = 2.811e-24
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGC+S GPHFNP  K
Sbjct:   51 GDTTNGCISAGPHFNPYNK 69

HSP 3 Score: 21.1718 bits (43), Expect = 2.811e-24
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   41 GLHGFHVH 48
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 2.814e-24
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG PED+ RH GDL NV  G DG A  ++ D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   63 PHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 30.0314 bits (66), Expect = 2.814e-24
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRK 71

HSP 3 Score: 21.1718 bits (43), Expect = 2.814e-24
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.651e-24
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV    +G A   +VD  I LSG  SIIGR +V H  PDDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   61 PHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150

HSP 2 Score: 31.187 bits (69), Expect = 3.651e-24
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   50 GDNTQGCTSAGPHFNPLSKK 69

HSP 3 Score: 21.9422 bits (45), Expect = 3.651e-24
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GDHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 6.145e-24
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV    +G A   +VD+ I LSG  SIIGR +V H  PDDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   61 PHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150

HSP 2 Score: 31.187 bits (69), Expect = 6.145e-24
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   50 GDNTQGCTSAGPHFNPLSKK 69

HSP 3 Score: 21.9422 bits (45), Expect = 6.145e-24
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GDHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.972e-24
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P      K HG P+D+ RH GDL NV    +G A F + D Q+ LSG  SIIGR +V H   DDLG+GG E +  TGNAG R++CG+I +
Sbjct:   60 PHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149

HSP 2 Score: 31.9574 bits (71), Expect = 7.972e-24
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC+S GPH+NP  K
Sbjct:   49 GDNTNGCISAGPHYNPFSK 67

HSP 3 Score: 23.483 bits (49), Expect = 7.972e-24
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:  186 GPHGFHVHA 212
            G HGFHVHA
Sbjct:   39 GKHGFHVHA 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.034e-23
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG PED+ RH GDL NV  G DG A  ++ D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   63 PHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 30.0314 bits (66), Expect = 1.034e-23
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRK 71

HSP 3 Score: 21.1718 bits (43), Expect = 1.034e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.740e-23
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV    +G A   +VD  I LSG  SIIGR +V H  PDDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   61 PHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150

HSP 2 Score: 31.187 bits (69), Expect = 1.740e-23
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   50 GDNTQGCTSAGPHFNPLSKK 69

HSP 3 Score: 21.9422 bits (45), Expect = 1.740e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GDHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.258e-23
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV  G DG A  +  D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   63 PHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 2.258e-23
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRQ 71

HSP 3 Score: 21.1718 bits (43), Expect = 2.258e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.258e-23
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV  G DG A  +  D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   63 PHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 2.258e-23
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRQ 71

HSP 3 Score: 21.1718 bits (43), Expect = 2.258e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.258e-23
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV  G DG A  +  D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   63 PHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 2.258e-23
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRQ 71

HSP 3 Score: 21.1718 bits (43), Expect = 2.258e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_BRUPA2.811e-2448.45Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_CALJA2.814e-2452.22Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_SHEEP3.651e-2452.22Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_BOSMU6.145e-2451.11Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_PRIGL7.972e-2448.89Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_CEBAP1.034e-2351.11Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_BOVIN1.740e-2351.11Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_MACMU2.258e-2351.11Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU2.258e-2351.11Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA2.258e-2351.11Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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