DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.258e-23
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG P D +RH GDL NV     G A   + D  + LSG +SIIGR +V H   DDLG+GG+E +  TGNAGGR++CG+I +
Sbjct:   70 KTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152

HSP 2 Score: 32.7278 bits (73), Expect = 2.258e-23
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC+S GPHFNP  K
Sbjct:   52 GDNTNGCISAGPHFNPHDK 70

HSP 3 Score: 23.483 bits (49), Expect = 2.258e-23
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3 
Query:  186 GPHGFHVHA 212
            G HGFHVHA
Sbjct:   42 GKHGFHVHA 50
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.928e-23
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV    +G A   +VD+ I LSG +SIIGR +V H  PDDLG+GG+E +  TGNA  R++CG+I +
Sbjct:   61 PHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150

HSP 2 Score: 31.187 bits (69), Expect = 2.928e-23
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   50 GDNTQGCTSAGPHFNPLSKK 69

HSP 3 Score: 21.9422 bits (45), Expect = 2.928e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GDHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.798e-23
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K+HG P D+ RH GDL NV  G DG A  ++ D  I LSG +SIIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   70 KKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 30.8018 bits (68), Expect = 3.798e-23
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   52 GDNTQGCTSAGPHFNPHSKK 71

HSP 3 Score: 21.9422 bits (45), Expect = 3.798e-23
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GQHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.112e-22
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            GK HG P D  RH GDL NV     G A  ++ D+Q+ L GP+S+IGR VV HA  DDLG+GG+E +  TGNAG R +CG+I
Sbjct:   69 GKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVI 150

HSP 2 Score: 31.9574 bits (71), Expect = 1.112e-22
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPHGK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.112e-22
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG P+D+ RH GDL N+     G A   + D+ + L GP S++GR+VV HA  DDLG+GG+E +  TGNAG R +CG+I L
Sbjct:   70 KTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152

HSP 2 Score: 34.2686 bits (77), Expect = 1.112e-22
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC+S GPHFNP +K
Sbjct:   52 GDVTNGCVSAGPHFNPFKK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.394e-22
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K+HG P D+ RH GDL NV  G DG A  ++ D  I LSG +SIIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   70 KKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 1.394e-22
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC + GPHFNP  K+
Sbjct:   52 GDNTQGCTTAGPHFNPHSKK 71

HSP 3 Score: 21.9422 bits (45), Expect = 1.394e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GEHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.394e-22
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV    +G A   +VD  I LSG  SIIGR +V H  PDDLG+GG+E +  TGNAG  ++CG+I +
Sbjct:   61 PHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150

HSP 2 Score: 31.187 bits (69), Expect = 1.394e-22
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  K+
Sbjct:   50 GDNTQGCTSAGPHFNPLSKK 69

HSP 3 Score: 21.9422 bits (45), Expect = 1.394e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   40 GDHGFHVH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-22
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            K HG P D  RH GDL NV   + G A F + D+ I L GPNSIIGR  V H   DDLG+GG++ +  TGNAGGR++CG+I
Sbjct:   68 KNHGAPGDTDRHVGDLGNVTA-EGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVI 147

HSP 2 Score: 32.7278 bits (73), Expect = 1.395e-22
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  211 LLGNTKNGCMSTGPHFNPARK 273
            + G+  NGCMS G HFNP  K
Sbjct:   48 VFGDNTNGCMSAGSHFNPENK 68

HSP 3 Score: 20.7866 bits (42), Expect = 1.395e-22
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   40 GLHGFHIH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.808e-22
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV    DG A  ++ D+ I LSG +SIIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   63 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 30.0314 bits (66), Expect = 1.808e-22
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTQGCTSAGPHFNPLSRK 71

HSP 3 Score: 21.1718 bits (43), Expect = 1.808e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.883e-22
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D+ RH GDL NV  G +G A   + D+ I LSG  S+IGR +V H   DDLG+GG++ +  TGNAG R++CG+I +
Sbjct:   62 PHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151

HSP 2 Score: 32.3426 bits (72), Expect = 1.883e-22
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+ + GC S GPHFNP  K+
Sbjct:   51 GDNRQGCTSAGPHFNPLSKK 70
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_DANRE2.258e-2350.60Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_CEREL2.928e-2350.00Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_MOUSE3.798e-2353.01Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_PAETN1.112e-2253.66Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_CANGA1.112e-2249.40Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_RAT1.394e-2253.01Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_CAPHI1.394e-2250.00Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC2_XENLA1.395e-2254.32Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_HYLLA1.808e-2248.89Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_RABIT1.883e-2247.78Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
back to top