DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.345e-22
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            P      K+H  P+D+ RH GDL NV    +G A   + D +I L+GP SIIGR +V H   DDLG+GG+E +  TGNAG R++CG+I
Sbjct:   63 PHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVI 149

HSP 2 Score: 36.1946 bits (82), Expect = 2.345e-22
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+  NGC+S GPHFNPA K+
Sbjct:   52 GDNTNGCISAGPHFNPASKK 71

HSP 3 Score: 21.9422 bits (45), Expect = 2.345e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GEHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.026e-22
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGIIDL 520
            P     GK HG P+ +IRH GDL NV  G DG A   + D  + L GPN+++GR++V HA  DDLG+G     E +  TGNAG R +CG+I L
Sbjct:   84 PHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176

HSP 2 Score: 33.113 bits (74), Expect = 3.026e-22
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G++ NGC+S GPHFNP  K
Sbjct:   73 GDSTNGCISAGPHFNPFGK 91

HSP 3 Score: 21.1718 bits (43), Expect = 3.026e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   63 GLHGFHVH 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.041e-22
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            P     GK HG P D+ RH GDL N+    +     T+ D  I L G ++I+GR +V HAD DDLG+GG   + TTG AG R+ CG+I
Sbjct:   62 PHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVI 149

HSP 2 Score: 34.6538 bits (78), Expect = 3.041e-22
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGC+S GPHFNP  K
Sbjct:   51 GDTTNGCVSAGPHFNPFGK 69

HSP 3 Score: 24.6386 bits (52), Expect = 3.041e-22
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  177 VDSGPHGFHVHA 212
            ++ G HGFHVHA
Sbjct:   38 LEKGEHGFHVHA 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.115e-22
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L K+HG P+D  RH GDL NV  G DG A  ++ D+ I LSG  SIIGR +V H   DDLG+G +E +  TGNAG R++CG+I +
Sbjct:   62 PHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151

HSP 2 Score: 28.8758 bits (63), Expect = 5.115e-22
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1 
Query:  232 GCMSTGPHFNPARKR 276
            GC S GPHFNP  K+
Sbjct:   56 GCTSAGPHFNPLSKK 70

HSP 3 Score: 21.9422 bits (45), Expect = 5.115e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   41 GEHGFHVH 48
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.398e-22
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P     GK+HG PEDD RH GDL N++   +G A  T  D  I L G +SI+GR +V HA  DD G+GG E + TTG+AG R +CG+I L
Sbjct:   63 PHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152

HSP 2 Score: 32.3426 bits (72), Expect = 5.398e-22
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+  NGC S GPHFNP  K+
Sbjct:   52 GDNTNGCTSAGPHFNPFGKQ 71
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.398e-22
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG P D++RH GD+ NV   ++G A  +  D+ I L GP S++GR+VV HA  DDLG+G  E +  TGNAG R +CG+I L
Sbjct:   70 KTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152

HSP 2 Score: 34.2686 bits (77), Expect = 5.398e-22
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC+S GPHFNP +K
Sbjct:   52 GDATNGCVSAGPHFNPFKK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 8.595e-22
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV    DG A+ ++ D+ I LSG + IIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   64 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153

HSP 2 Score: 28.8758 bits (63), Expect = 8.595e-22
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   53 GDNTVGCTSAGPHFNPLSRK 72

HSP 3 Score: 21.1718 bits (43), Expect = 8.595e-22
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   43 GLHGFHVH 50
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-22
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            GK HG P D  RH GDL NV    +G A+  + D  + L GP SIIGR +V HA  DD G+GG+  +  TGNAG R +CG+I +
Sbjct:   69 GKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152

HSP 2 Score: 31.9574 bits (71), Expect = 9.137e-22
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPHGK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-22
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            GK HG P D+ RH GDL N+     G A  +V D  + L GP+S+IGR VV HA  DDLG+G +E +  TGNAG R +CG+I +
Sbjct:   69 GKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152

HSP 2 Score: 31.9574 bits (71), Expect = 9.137e-22
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPHGK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.114e-21
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGII 514
            P      K HG P+DD+RH GDL NV  G DG A F + D+ + + G ++++GR++V HA  DDLG+G     E +  TGN G RV+CG+I
Sbjct:   63 PHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153

HSP 2 Score: 33.113 bits (74), Expect = 1.114e-21
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G++ NGC S GPHFNP  K
Sbjct:   52 GDSTNGCTSAGPHFNPFNK 70

HSP 3 Score: 21.1718 bits (43), Expect = 1.114e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_XIPGL2.345e-2247.73Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_CAEEL3.026e-2247.31Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC1_DICDI3.041e-2245.45Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_CANFA5.115e-2250.00Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_CANAL5.398e-2250.00Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_YEAST5.398e-2249.40Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_PONPY8.595e-2247.78Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_CRYGA9.137e-2248.81Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_CLAPU9.137e-2250.00Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_HAECO1.114e-2145.05Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
back to top