DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.115e-21
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV    DG A  ++ D+ I LSG + IIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   63 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 29.261 bits (64), Expect = 1.115e-21
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTAGCTSAGPHFNPLSRK 71

HSP 3 Score: 21.1718 bits (43), Expect = 1.115e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.115e-21
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            P    L ++HG P+D+ RH GDL NV    DG A  ++ D+ I LSG + IIGR +V H   DDLG+GG+E +  TGNAG R++CG+I +
Sbjct:   63 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 29.261 bits (64), Expect = 1.115e-21
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARKR 276
            G+   GC S GPHFNP  ++
Sbjct:   52 GDNTAGCTSAGPHFNPLSRK 71

HSP 3 Score: 21.1718 bits (43), Expect = 1.115e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   42 GLHGFHVH 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.115e-21
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            KEHG P D+ RH GDL N+    D  +   + DN I L G NSIIGR++V H   DDLG+G  + +  TGNAG R+ CGII L
Sbjct:   67 KEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149

HSP 2 Score: 33.4982 bits (75), Expect = 1.115e-21
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+T NGC+S G HFNP +K
Sbjct:   49 GDTTNGCLSAGAHFNPFKK 67

HSP 3 Score: 21.9422 bits (45), Expect = 1.115e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   39 GKHGFHVH 46
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.116e-21
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            K HG P+D  RH GDL NV   + G A F   D QI L G  SIIGR  V H   DDLG+GG + +  TGNAGGR++CG+I
Sbjct:   68 KNHGSPKDADRHVGDLGNVTA-EGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVI 147

HSP 2 Score: 34.6538 bits (78), Expect = 1.116e-21
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  211 LLGNTKNGCMSTGPHFNPARK 273
            + G+  NGC+S GPHFNP  K
Sbjct:   48 VFGDNTNGCLSAGPHFNPQNK 68

HSP 3 Score: 21.1718 bits (43), Expect = 1.116e-21
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFH+H
Sbjct:   40 GNHGFHIH 47
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.189e-21
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGII 514
            GK HG P D  RH GDL N+     G A  +V D+ + L GP+S++GR VV H   DDLG+GG+E +  TGNAG R +CG+I
Sbjct:   69 GKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVI 150

HSP 2 Score: 31.9574 bits (71), Expect = 1.189e-21
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPHGK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.189e-21
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG P D  RH GDL NV    +G A   + D+ + L+G NSI+GR VV H   DDLG+GGH  +  TGNAG R +CG+I L
Sbjct:   70 KNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGL 152

HSP 2 Score: 33.4982 bits (75), Expect = 1.189e-21
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP +K
Sbjct:   52 GDNTNGCTSAGPHFNPFKK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.547e-21
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            KEHG PEDD RH GDL NV     G A  +  D  + L G NSI+GR VV HA  DDLG+GG+  +  TGNAG R +CG+I L
Sbjct:   70 KEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152

HSP 2 Score: 32.3426 bits (72), Expect = 1.547e-21
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPFTK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.865e-21
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQG---GHELNFTTGNAGGRVSCGIIDL 520
            P     GK HG P  + RH GDL NV  G DG A   + D  I L G N++IGR++V HA  DDLGQG     E +  TGNAG R +CG+I L
Sbjct:   84 PHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVIAL 176

HSP 2 Score: 33.4982 bits (75), Expect = 1.865e-21
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G++ NGC+S GPHFNP  K
Sbjct:   73 GDSTNGCLSAGPHFNPFGK 91

HSP 3 Score: 21.1718 bits (43), Expect = 1.865e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3 
Query:  186 GPHGFHVH 209
            G HGFHVH
Sbjct:   63 GLHGFHVH 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.012e-21
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:  272 KEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            K HG PED  RH GDL N+    +G +  TV D+ + L GP S+IGR +V H   DDLG+G +E +  TGNAG R +CG+I +
Sbjct:   70 KTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152

HSP 2 Score: 32.7278 bits (73), Expect = 2.012e-21
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNPARK 273
            G+  NGC S GPHFNP  K
Sbjct:   52 GDNTNGCTSAGPHFNPHNK 70
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.618e-21
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDL 520
            G  HG    ++RH GDL N+     G A  TV DN + L GP S+IGR VV HA  DDLG+GG+E +  TGNAG R +CG+I +
Sbjct:   69 GTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGI 152

HSP 2 Score: 31.5722 bits (70), Expect = 2.618e-21
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  217 GNTKNGCMSTGPHFNP 264
            G+  NGC S GPHFNP
Sbjct:   52 GDNTNGCTSAGPHFNP 67
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_PANTR1.115e-2147.78Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN1.115e-2147.78Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC5_DICDI1.115e-2150.60Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC1_XENLA1.116e-2153.09Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CORMI1.189e-2150.00Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_YARLI1.189e-2150.60Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC1_DEBHA1.547e-2154.22Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CAEBR1.865e-2148.39Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_COLGL2.012e-2148.19Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_NEUCR2.618e-2150.00Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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