DY257261

Overview
NameDY257261
Unique NameDY257261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1312
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.088e-21
Identity = 61/163 (37.42%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  122 KKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQE---------GFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQ 574
            +K E  RPVLG  + PYPRRCRTGRP    D   E R   +  FYVPRDE F E+K+ TF A    ++ H LVPS+  A  + D+ F  FS ID L+   + L   + +         GF N +L        +  + +L ++TP  +  D+F W +D EF +
Sbjct:  267 RKTERVRPVLGVPETPYPRRCRTGRPLVSKDPPCESRGKEKEEFYVPRDEVFEEIKRDTFRAGRFKALFHNLVPSIAAALSNLDIPFTCFSDIDNLYKSNIVLGHTEPKDTGLGGFIGGFMNGIL--------NVTETLLKYDTPAVIKWDRFAWLRDNEFGR 421          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.427e-19
Identity = 60/157 (38.22%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PDK   L RPVLGG   PYPRR RTGRP+   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      +    +P + +     G+  L +  P+ M  +K  W  DEEF++
Sbjct:  101 GNPDKGAALARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGLKSVSQDVLPVLTDAFDGNLLSLEFDNFAEVHKLYEGGVTLPTNFLSKY--APIPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFAR 255          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.287e-18
Identity = 62/159 (38.99%), Postives = 81/159 (50.94%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIDDT-GDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PD   +  RPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      F + + P  ++K I  T G+  L +  P+ M  DK  W  DEEF++
Sbjct:  207 GNPDSGDKYARPVLGGSALPYPRRERTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLP----TNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFAR 361          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.075e-17
Identity = 68/219 (31.05%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKA-IDDTGDNILLFETPETMVRDKFFWFKDEEFSQAFPPLATPV-FPTVNHSPGN*ETLSDPEIF-------RSTKIKNNILFFSIINAGEG 721
            G PDK  +L RPVLGG Q  PYPRR RTGR    TD  +E R    + N YVPRDE F  +K   F   ++ +++  ++P + T        F  F  I  L+  G+ +            +P  L+K+ +   GD +L    P  +  DKF W  DEEF++       PV    + + P   ++  DP ++           IK+N+   ++ NA +G
Sbjct:  214 GQPDKGSKLVRPVLGGSQELPYPRRGRTGRAPTKTDPNTESRLPLLDLNIYVPRDERFGHLKMSDFLGYSLKAIVEGVLPIIRTYVDTTPKEFDSFQDIMELYEGGLKVANASALAEIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKEDKFAWRTDEEFAREMLAGVNPVMIKRLTNFPA--KSTLDPNVYGDHTSKITEAHIKHNMEGLTVQNALKG 430          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.186e-16
Identity = 63/185 (34.05%), Postives = 88/185 (47.57%), Query Frame = 2
Query:   83 Y*CFPTIVSGYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG-----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFW-----NTLLPRLVKAIDDT-GDNILLFETPETMVRDKFFWFKDEEFSQAFPPLATPV 601
            Y C+  +  G PDK  E  RP+LGG    PYPRR RTGR     D   E R       + YVPRDE F  VK+  F   ++ S L  L+P+ +    +    F  F+ +  L+  G+ LP    EG W     + +   ++K I  T G  +L + TP+ +  DK  W  DEEF +     + PV
Sbjct:  199 YACYNDL--GEPDKGEEYARPILGGSSEYPYPRRGRTGREPTKADPNCESRNPLPMSLDIYVPRDERFGHVKKSDFLTSSLKSSLQTLLPAFKALCDNTPNEFNSFADVLNLYEGGIKLP----EGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDKTAWRTDEEFGREMLAGSNPV 377          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.023e-16
Identity = 61/172 (35.47%), Postives = 79/172 (45.93%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQAFPPLATPV 601
            G P K P   RPVLGG Q  PYPRR RTGR     D  +E R       + YVPRDE F  +K   F A  + ++   + P+LE  F D    F  F  +  ++ EG++LP   L      N  L  L +     G   L F  P+ +  DK  W  DEEF++       PV
Sbjct:  209 GVPPKNP---RPVLGGTQEYPYPRRGRTGRKPTKEDPQTESRLPITSSLDIYVPRDERFGHLKMSDFLAYALKAIAQFIQPALEAVFDDTPKEFDSFEDVLKIYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKTAWRTDEEFAREMLAGLNPV 377          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.641e-16
Identity = 58/161 (36.02%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL---GFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PD      RPVLGG +  PYPRR RTGR     D  SE R    Y+PRDEAF  +K   F    + +V   +VP+LE+ F D +     F  F  +  L+  G+ LP   L Q     + LP L +     G+N L +  P+ +   +  W  DEEF++
Sbjct:  214 GNPDSGENHARPVLGGSETYPYPRRGRTGRKPTRKDPNSESRSDYVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQ----ISPLPVLKEIFRTDGENTLKYPPPKVIQVSRSGWMTDEEFAR 370          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.641e-16
Identity = 65/163 (39.88%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIDDT-GDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PD    L RP+LGG   +PYPRR RTGR     D  SEK     YVPRDE F  +K   F A  + SV   +VP+ E+AF   DL      F  F  +  LF  G+ LP        +TL P  +VK I  T G+ +L F  P  +   K  W  DEEF++
Sbjct:  219 GNPDHGEHLARPILGGSSTHPYPRRGRTGRYPTRKDPNSEKPATETYVPRDENFGHLKSSDFLAYGIKSVSQCVVPAFESAF---DLNFTPNEFDSFQDVRNLFEGGIKLP----LDVISTLSPLPVVKEIFRTDGEQVLKFTPPHVIRVSKSAWMTDEEFAR 374          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 59/161 (36.65%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PDK     RPVLGG    PYPRR RTGR     D  SE R  + Y+PRDEAF  +K   F    + SV   ++P L++AF   DL      F  F  +  L++ G+ LP         + LP L +     G+  L F  P+ +   K  W  DEEF++
Sbjct:  211 GDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAR 366          
BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.921e-15
Identity = 56/159 (35.22%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  110 GYPDKKPELTRPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAID---ALFNEGVNLPPLKQEGFWNTLLPRLVKAIDDTGDNILLFETPETMVRDKFFWFKDEEFSQ 574
            G PD+K  L RPVLGG    PYPRR RTGR +   +  SE R    Y+PRDEAF  VK   F    + S    +VP L +  V   L  P F+  +   +L++ G+ LP         + +P   +     G+  L F  P+ +  D   W  DEEF++
Sbjct:  219 GAPDQKATLGRPVLGGSSTLPYPRRGRTGRKKTVKEPQSESRSDTVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSV-VTLQLNNPEFNTFEDVRSLYDGGIKLPTDVLSKI--SPIPLFSELFRSDGEAALKFPPPKVIQVDHSAWMTDEEFAR 374          
The following BLAST results are available for this feature:
BLAST of DY257261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ARATH2.088e-2137.42Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXB_PHAVU7.427e-1938.22Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX4_SOYBN6.287e-1838.99Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX4_ORYSJ4.075e-1731.05Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOXB_SOLLC1.186e-1634.05Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_ARATH2.023e-1635.47Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_PEA2.641e-1636.02Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_PEA2.641e-1639.88Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX3_SOYBN7.686e-1636.65Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_LENCU2.921e-1535.22Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DA03FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257261 ID=DY257261; Name=DY257261; organism=Citrus sinensis; type=EST; length=1312bp
CGCTATGTTGTCTTGTCTTCTTGAAGAACACTACTTATCATTGATAATAT
TGTCTTTTGTTTTTATAAGTTGTTTGTTGATCTATTAATGCTTTCCAACA
ATAGTCTCTGGATATCCTGACAAGAAACCTGAATTAACAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGATGATACAGGAGATAATA
TTTTGCTGTTTGAAACGCCAGAAACGATGGTCAGAGACAAATTCTTTTGG
TTTAAGGATGAAGAATTTTCACAGGCATTCCCTCCACTAGCTACACCTGT
TTTCCCCACCGTTAATCACAGTCCTGGCAATTGAGAAACCCTCTCTGATC
CGGAAATTTTCCGATCAACCAAAATAAAAAATAATATCTTATTCTTTTCA
ATAATAAATGCGGGGGAGGGACTTCCTGTAATTGAGGAAACGAACGAACA
CATAAAACACGGTTTGTATTTGTAGAGGCTTCGCCCATGTAAATATGATC
CCATACCTACATTTAAATTAAACTATGACCTACATAAGTGTATATCAATG
ATGAATTGAATCTTTTGTTGGTTAGTACTTATTCTTTTTTCACTTCACAG
AATATTTTTACATATATTGTTAGGGCAGTTTTTACGGTGGTGTTAGTAAA
ATAGAAACGCTCCTCTGCTCGAATTTCAGCAAACACGGCACGTGGATGAC
CAAAAAGAATACTTAACTCTCGCCTAATACTCCCGATCAGCCTCTCTCTA
GAGTCTCGCCGACACTCCCCTCTAACTCCCACCTACACAGTATAGATGAG
TTAATAGTACCCCTTTTGGACTAATACTTACAATCCACTCACTATCCCCC
CTCAACAATAATACTCCCATTAACTCAACTATAATTCATTCATACTACCT
GCTAGAAGCAACAGTCCTCTTTCCCTCCAATTAAACAAAAATAACAGCCA
ATACACAATAAACCAACAAAGCGACACCTTCAACACCACTTTCTCCTCCA
TCATCAAGCTAA
back to top