DY257261

Overview
NameDY257261
Unique NameDY257261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1312
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY257261 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.722e-11
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 2 
Query:  140 RPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVK-AIDDTGDNILLFETPETMVRDKFFWFKDEEFSQAFPPLATPVFPT 610
            RP+LGG  + PYPRR RT R    +D   E R       YVPRDE F  +K   F   ++ ++   ++P++ T +VD   G F  F  I  L+  G+ LP +          P +L+K  +   GD++L    P  +  +K  W  DEEF++       PV  T
Sbjct:  213 RPILGGNSDHPYPRRGRTERKPNASDPSLESRLSLLEQIYVPRDEKFGHLKTSDFLGYSIKAITQGILPAVRT-YVDTTPGEFDSFQDIINLYEGGIKLPKVAALEELRKQFPLQLIKDLLPVGGDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVNPVMIT 375
The following BLAST results are available for this feature:
BLAST of DY257261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_HORVU9.722e-1132.32Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DA03FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257261 ID=DY257261; Name=DY257261; organism=Citrus sinensis; type=EST; length=1312bp
CGCTATGTTGTCTTGTCTTCTTGAAGAACACTACTTATCATTGATAATAT
TGTCTTTTGTTTTTATAAGTTGTTTGTTGATCTATTAATGCTTTCCAACA
ATAGTCTCTGGATATCCTGACAAGAAACCTGAATTAACAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGATGATACAGGAGATAATA
TTTTGCTGTTTGAAACGCCAGAAACGATGGTCAGAGACAAATTCTTTTGG
TTTAAGGATGAAGAATTTTCACAGGCATTCCCTCCACTAGCTACACCTGT
TTTCCCCACCGTTAATCACAGTCCTGGCAATTGAGAAACCCTCTCTGATC
CGGAAATTTTCCGATCAACCAAAATAAAAAATAATATCTTATTCTTTTCA
ATAATAAATGCGGGGGAGGGACTTCCTGTAATTGAGGAAACGAACGAACA
CATAAAACACGGTTTGTATTTGTAGAGGCTTCGCCCATGTAAATATGATC
CCATACCTACATTTAAATTAAACTATGACCTACATAAGTGTATATCAATG
ATGAATTGAATCTTTTGTTGGTTAGTACTTATTCTTTTTTCACTTCACAG
AATATTTTTACATATATTGTTAGGGCAGTTTTTACGGTGGTGTTAGTAAA
ATAGAAACGCTCCTCTGCTCGAATTTCAGCAAACACGGCACGTGGATGAC
CAAAAAGAATACTTAACTCTCGCCTAATACTCCCGATCAGCCTCTCTCTA
GAGTCTCGCCGACACTCCCCTCTAACTCCCACCTACACAGTATAGATGAG
TTAATAGTACCCCTTTTGGACTAATACTTACAATCCACTCACTATCCCCC
CTCAACAATAATACTCCCATTAACTCAACTATAATTCATTCATACTACCT
GCTAGAAGCAACAGTCCTCTTTCCCTCCAATTAAACAAAAATAACAGCCA
ATACACAATAAACCAACAAAGCGACACCTTCAACACCACTTTCTCCTCCA
TCATCAAGCTAA
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