FC871264

Overview
NameFC871264
Unique NameFC871264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 45/171 (26.32%), Postives = 81/171 (47.37%), Query Frame = 2
Query:   44 NPC--TWFHVTCDSNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKEL---------------GNLKSLVSM-------DMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNG 484
            +PC  +W  +TC  ++ V  + +    +SG+LG ++G L+ L YL++  N+++G +P +L               GN+   VS+       ++  N L GE+   F  L  L+ + L++N+LTG +P+    L+ LK   +  N   G+I            +  NN+  G
Sbjct:   57 DPCGDSWDGITCKGSS-VTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSENDFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFANLTGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTG 226          
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  101 DLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP---------VDGPFRSFPMESFENNKLNG 484
            D+ N N S      +  ++ L  L L  N+++G IP  +G   SL  +D+  NKL G IP S  NL+ L  L L NN L GS+P +      L   DVS N L G++P         ++    +F +E  +N  L+G
Sbjct:  275 DISNGNSSLEF---IKDMKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTIPASLFNLRQLTHLFLGNNTLNGSLPTQKG--QSLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEGLDNRVLSG 406          
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 2
Query:   98 LDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPV--DGPFRSFPMESFENNKLNGP 487
            +D  N++I G++   +     LQ L L  N+ +G IP+ L +LKSL  M + +N L G+IP  F +L  +  + L++N L+G +P  +  LS L    + NN L G + V  D P +     + ENN  NGP
Sbjct:  105 MDFSNNHIGGSIPSTLPV--SLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDVLQDLPLKDL---NVENNLFNGP 231          
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  101 DLGNSNISGT-LGPEV--GQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 424
            +L   N+ G  LGPEV      +L  + L  N    KIP+++  L  L S+D+  NK  G IP+   +L SL+ L L  N L+GS+P      S L++ DVS N L G +P
Sbjct:  180 NLQELNLGGNKLGPEVVPSLASNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLP 290          
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  161 LQYLELYMNDISGKIPKELGNLKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 424
            LQ L L  N   G IP ELGNL +L  +D++ N L G IP SF     L+ L L+ N+LTGSIP     L  L V D++ N L G +P
Sbjct:  161 LQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPG--FVLPALSVLDLNQNLLTGPVP 246          

HSP 2 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 42/147 (28.57%), Postives = 67/147 (45.58%), Query Frame = 2
Query:   68 TCDSNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKEL------------GN--------------LKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD 430
            T  S   +I++DL  + ++G +   + +L  L  L+L  N +SG  P  L            GN              LK+L+ + + +  ++G IPKS   L SL+ L L  N LTG IP E   +  L    +++N L G +P +
Sbjct:  248 TLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYNRLSGPFPSSLQGLNSLQALMLKGNTKFSTTIPENAFKGLKNLMILVLSNTNIQGSIPKSLTRLNSLRVLHLEGNNLTGEIPLEFRDVKHLSELRLNDNSLTGPVPFE 394          
BLAST of FC871264 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 45/151 (29.80%), Postives = 69/151 (45.70%), Query Frame = 2
Query:   62 HVTCD-------SNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDI-----------------------SGKIPKELGNLKSLVSMDMYHNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 424
            ++TCD       S+ HVIR+ L + N++G + PE  +L+HL+ L+L  N +                       SG  PK L  L  L ++ +  N+  G IP     L  L+ L L +N  TG +  +L  L +L    +S+N   G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
The following BLAST results are available for this feature:
BLAST of FC871264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SRF4_ARATH3.331e-1126.32Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
Y5614_ARATH4.351e-1133.58Probable LRR receptor-like serine/threonine-protei... [more]
SRF1_ARATH4.351e-1134.85Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y1143_ARATH5.682e-1137.84Probable LRR receptor-like serine/threonine-protei... [more]
TMM_ARATH5.682e-1145.45Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
Y1765_ARATH9.693e-1129.80Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871264 ID=FC871264; Name=FC871264; organism=Citrus sinensis; type=EST; length=654bp
GGACCCCACAAAAGAGNAGCAGAGCTTCGACCCAACACTGGTTAATCCCT
GCACTTGGTTCCATGTCACCTGTGATTCCAACAATCATGTGATTCGTTTG
GACTTGGGTAACTCTAATATTTCTGGAACTTTGGGGCCTGAGGTTGGCCA
GCTCCAGCATCTGCAGTACTTGGAGCTTTACATGAATGACATAAGTGGGA
AAATTCCGAAAGAGTTAGGTAATTTGAAAAGCCTTGTCAGCATGGATATG
TATCATAATAAACTGGAAGGAGAAATACCAAAGTCCTTTGCCAATTTGAA
GTCACTTAAATTTCTGCGGTTGAACAACAACAAACTAACAGGATCAATTC
CGAGGGAGCTGACCACCCTGTCGGACCTCAAAGTTTTTGATGTTTCTAAC
AATGGTCTCTGTGGGACAATCCCTGTTGATGGTCCTTTTAGAAGCTTTCC
TATGGAGAGTTTTGAAAATAATAAACTCAATGGACCAGAGCTGCAAGGAC
TGGTGCCTTATGATTTTGGATGCTGAAGAAGGTTGAAAACCCTCCGTCTT
CTATTGAAGACCATAATGTTAAAGACTCGTATAGGGTAAAATTATATTGT
GTGCCTCAGCTTGATCGAATGGCTAGATATATTATGTCAGCGGCGGTGAC
TGTT
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