EY680430

Overview
NameEY680430
Unique NameEY680430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 9.260e-87
Identity = 150/178 (84.27%), Postives = 161/178 (90.45%), Query Frame = 2
Query:   89 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 622
            NGGR+SMR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.299e-80
Identity = 137/186 (73.66%), Postives = 157/186 (84.41%), Query Frame = 2
Query:  110 RKTGSKSV---SSGSPWYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNG 655
            +KT +K+    SSG  +YGP+R K+LGP S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FA+L+VKEIKNG
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNG 205          

HSP 2 Score: 37.3502 bits (85), Expect = 1.299e-80
Identity = 18/29 (62.07%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  655 KLAMFSWFGFFVQAIVPGKGTLKKLGQTL 741
            +LA FS FGFFVQAIV GKG ++ L   L
Sbjct:  206 RLASFSMFGFFVQAIVTGKGPVQNLDDHL 234          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.693e-80
Identity = 148/204 (72.55%), Postives = 161/204 (78.92%), Query Frame = 2
Query:   44 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNG 655
            + K   L P  + L      +M K  +KS  S S      RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFA+L+VKE+KNG
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNG 220          

HSP 2 Score: 38.1206 bits (87), Expect = 1.693e-80
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = 1
Query:  655 KLAMFSWFGFFVQAIVPGKGTLKKLGQTLG*T 750
            +LAMFS FGFFVQAIV  K  L+ L   LG T
Sbjct:  221 RLAMFSMFGFFVQAIVSRKDRLENLADHLGWT 252          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.528e-76
Identity = 142/211 (67.30%), Postives = 162/211 (76.78%), Query Frame = 2
Query:  134 SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNGSWLCSPGLVSSFRPLSPARER*KNLAKPLAEPGKKN 763
            S+G  WYGPDR K+LGP S   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FA+L+VKEIKNG            + +   +   +NLA  LA+PG  N
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.435e-75
Identity = 137/208 (65.87%), Postives = 157/208 (75.48%), Query Frame = 2
Query:   41 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFADLRVKEIKNG 655
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FA+L+VKEIKNG
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNG 217          

HSP 2 Score: 40.4318 bits (93), Expect = 3.435e-75
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  655 KLAMFSWFGFFVQAIVPGKGTLKKL 729
            +LAMFS FGFFVQAIV GKG L+ L
Sbjct:  218 RLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 5.843e-75
Identity = 138/207 (66.67%), Postives = 158/207 (76.33%), Query Frame = 2
Query:   47 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFADLRVKEIKNG 655
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FA+L+VKEIKNG
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220          

HSP 2 Score: 40.4318 bits (93), Expect = 5.843e-75
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  655 KLAMFSWFGFFVQAIVPGKGTLKKL 729
            +LAMFS FGFFVQAIV GKG L+ L
Sbjct:  221 RLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.424e-65
Identity = 128/205 (62.44%), Postives = 153/205 (74.63%), Query Frame = 2
Query:  149 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNGSWLCSPGLVSSFRPLSPARER*KNLAKPLAEP 751
            +YGPDR K+LGP S  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FA+L+VKEIKNG       L    + +   +   +NL   LA+P
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.899e-64
Identity = 131/219 (59.82%), Postives = 155/219 (70.78%), Query Frame = 2
Query:  113 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNGSWLCSPGLVSSFRPLSPARER*KNLAKPLAEPGKKN 763
            K  SKS SS + +YGPD       L  + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FA+L+VKEIKNG       L    + +   +   +NL   LA P + N
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.994e-52
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 2
Query:  350 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNG 655
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA A+L+VKEIKNG
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNG 102          

HSP 2 Score: 39.6614 bits (91), Expect = 2.994e-52
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  655 KLAMFSWFGFFVQAIVPGKGTLKKL 729
            +LAMFS FGFFVQAIV GKG ++ L
Sbjct:  103 RLAMFSMFGFFVQAIVTGKGPIENL 127          
BLAST of EY680430 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.086e-38
Identity = 104/222 (46.85%), Postives = 124/222 (55.86%), Query Frame = 2
Query:  122 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFADLRVKEIKNGSWLCSPGLVSSFRPLSPARER*KNLAKPLAEPGKKN 763
            SK+VS  S     WYGPDR  +L  G L   E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A L+VKEIKNG       L    +         +NLAK L++P   N
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
The following BLAST results are available for this feature:
BLAST of EY680430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB21_SILPR9.260e-8784.27Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLRE1.299e-8073.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.693e-8072.55Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO2.528e-7667.30Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC3.435e-7565.87Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU5.843e-7566.67Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE3.424e-6562.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA2.899e-6459.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY2.994e-5286.27Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH6.086e-3846.85Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-A04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680430 ID=EY680430; Name=EY680430; organism=Citrus sinensis; type=EST; length=813bp
CCACGCGTCCGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCA
AGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGC
ATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTG
GTACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCC
CAAGCTACTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCC
GGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGT
CATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGG
AGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAG
GCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCC
AAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGG
TCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGT
GAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCGGAGGCTTTTGCTGACCTCAGGGTTAAGGAAATCAAAA
ATGGAAGTTGGCTATGTTCTCCTGGTTTGGTTTCTTCGTTCAGGCCATTG
TCCCCGGCAAGGGAACGTTAAAAAAACTTGGCCAAACCCTTGGCTGAACC
TGGCAAAAAAAATGGCCGGGGCCTCACCCCCCCAATTTTTTCCCCCGAAA
ATGAGCCTTCGGT
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