DY257212

Overview
NameDY257212
Unique NameDY257212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1280
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 5.243e-62
Identity = 119/252 (47.22%), Postives = 163/252 (64.68%), Query Frame = 3
Query:    3 ECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEELAEELIFHINYLGAYQPTFPSIFSK 752
            E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+ +  L EELIF ++YLG   PT    FS+
Sbjct:   69 EATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSR 318          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 4.449e-53
Identity = 115/260 (44.23%), Postives = 156/260 (60.00%), Query Frame = 3
Query:   12 KLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTE-KNKETGW---DTPIHVDAASGGFIAPF--------LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEELAEELIFHINYLGAYQPTFPSIFSK 752
            KL+   + KN  D DEYP   EL  RC++++A+L++A     E  +G  T GSSEAIML GLA K++W+++ K  GK   KPNI+  +  QV  EKF RYFEVE + V +S   ++++DP    + VDENTI    ILG+T  G  E+V+ + D+L++ + K   W   D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+GWV+WR +  LA+EL F + YLG  + TF   FS+
Sbjct:  104 KLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWHA--NPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSR 361          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.203e-19
Identity = 65/229 (28.38%), Postives = 114/229 (49.78%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG-VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEELAEELIFHINYL 713
            +N N  D   +P T ++++RC+ +I  L + P      A G + T G+   I     A + K  ++R+A        NIV   +    +EK ++   + ++   L +     DP++   ++D+NTI + A+ G+T  G+ + ++ +  L  E       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL     G +++R  E L + L  +  YL
Sbjct:   48 VNTNLGDPKLFPGTADIEHRCIGLIGDLLHLP-----AATGYISTGGTESNIQALRTAIQMKHTDRRRA--------NIVVPESAHYSFEKASQMLGIAIRRAPLDD-LLRADPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGLSTIPSGGLLYR-SESLMKVLEINAQYL 255          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.069e-18
Identity = 70/213 (32.86%), Postives = 105/213 (49.30%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEE 677
            N  D   +P TT++++R V+ +  L + P        G GT  + +AI +A          K K E K    PNIV  A+    ++K      +E++ V   + Y V D  K  EMVD+NTI V+AI G+T  G  +DV+ +  +  E       D   HVDAA GG + PFL     +DF +P V SI++  HK G+     G ++ R+ E+
Sbjct:   51 NLGDPGLFPGTTKIEDRLVHSLGELMHHPGAGGYATSG-GTESNLQAIRIA---------KKLKPEIK---NPNIVVPASAHFSFDKTCDILGLEMRTVPYGKNYTV-DCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGMSTIPCGCLLLREPEQ 243          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: SGPL_YEAST (Sphingosine-1-phosphate lyase OS=Saccharomyces cerevisiae GN=DPL1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 61/217 (28.11%), Postives = 109/217 (50.23%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEW-DFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKE 674
            N +  D +P   ++++  V+++ R+FNAP   S+T  G  T G +E+++LA L+ K    + R        +P I+        ++K A YF ++L+ V+L    Y +D  K  + +++NTI +     +  +G  +D++ L  +  +      +  P+HVD+  G FI  F+    Y  L   DFR+P V SI+   HKYG    G   +++R  +
Sbjct:  195 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTILLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSD 397          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.012e-17
Identity = 61/217 (28.11%), Postives = 101/217 (46.54%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEEL 680
            +  N  D   +P T E++ R V I+  L          + G GT  + +A+  A           R + G+     NIV   +    ++K A    +E+++ +L E   V D      ++D+ T+C+  I G+T  G+ + +  L++L  E         P+HVDAA GGF+ PFL  +  WDFR   V+SI +  HK G+     G +++R  + L
Sbjct:   51 LETNLGDPGLFPGTAEIERRVVGILGSLLGCSDATGYVSTG-GTESNIQAVRAA-----------RNSSGRR--DGNIVVPRSAHFSFDKIADLLNLEVRKAELDESLRV-DVGDVERLIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGMSPIPAGGLIFRSSDPL 246          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.349e-16
Identity = 68/229 (29.69%), Postives = 110/229 (48.03%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEELAEELIFHINYLGAYQ 725
            N  D   +P T  L++R +   A L++ P     +A G  T G +E+ +   L F +K +N ++        PNI+  A+    +EK     ++E++ V + E Y +   A A E++D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL     G V+  + E +   L+    YL   Q
Sbjct:   51 NLGDPGLFPGTATLEDRLIRWFADLYHEP-----SAGGCTTSGGTESNIQV-LRFCKKTKNVKE--------PNIIVPASAHFSFEKACGMMDIEMRVVPVDEQYRMKTDA-AGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGLSTIPSG-VLMVRDERVFCNLLVETPYLTTKQ 257          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_METAC (L-tyrosine decarboxylase OS=Methanosarcina acetivorans GN=mfnA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.202e-15
Identity = 63/220 (28.64%), Postives = 103/220 (46.82%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLED-------SETAVGVGTVGSSEAIMLAGLAFKRK-WQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWR 665
            I  N  D+  +   + L+   V ++  L +AP  D         +A G  T G +E+ + A    K      K++ +G P    NIV   +    ++K A    +E++   L   + V D A    ++D NTI +  I G+T  G+ + +  L+++  E       +  +H+DAA GGF+ PFL     +DF+LP V SI V  HK GL     G +++R
Sbjct:   48 IEANLGDLGLFAGASRLEQEVVGMLGELLHAPSIDVPFGGSCESSACGYLTTGGTESNIQAVRGMKNLVTTGKKELKGAP----NIVIPESAHFSFDKVADMMGIEVRRASLDSEFRV-DMASIESLIDANTIGLIGIAGNTEFGQIDPIDKLSEIALEN------ELFLHIDAAFGGFVIPFLEKPQPFDFKLPGVTSIAVDPHKMGLSTIPSGALLFR 256          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.071e-14
Identity = 61/217 (28.11%), Postives = 99/217 (45.62%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKEEL 680
            I  N  D   +  T EL+ + + +I  + +      ET  G    G +EA  + G+   R  Q K        + PNIV        +EK      V++K   + E Y V D  +  +++DENT+ +  I G+T  G+ + +  L+ L  E+  E      +HVDAA GG + PF+     +DF+   V SI +  HK G+     G +++R +  L
Sbjct:   40 IETNLGDPGIFRGTVELEAKLMRLIGDILHC-----ETPAGYICSGGTEA-NIQGIRAARNVQKK--------ENPNIVIPKTAHFSFEKIGDILGVKIKRAGVDEEYKV-DVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHKMGMATIPAGGIIFRNESYL 235          
BLAST of DY257212 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.399e-14
Identity = 66/222 (29.73%), Postives = 100/222 (45.05%), Query Frame = 3
Query:   21 MAAINKNYVDMDEYPVTTELQNRCVNIIAR-LFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL---YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRKKE 674
            +A ++ N  D   +P     +  C+  +A  L + P    E A G    G +EA +LA  A +     +            I+  A     +EK AR   ++L E  L   Y V D     +++  +T  +  I+G+T  G  +D++ L+D+  +         P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV    G +V+R  E
Sbjct:   31 VAGLHVNLGDPYLFPNAYRAERECIGWLAETLLDHPAP--EEAEGSIVSGGTEANILAAYAAREVTGGRE-----------IIVPATRHFSFEKAARMLRMKLVEAPLRSDYTV-DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVAEDHG------VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLVPPPAGGIVFRDDE 232          
The following BLAST results are available for this feature:
BLAST of DY257212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
DCEB_LISMO5.243e-6247.22Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCE_YEAST4.449e-5344.23Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_UNCMA4.203e-1928.38L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METLZ6.069e-1832.86L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
SGPL_YEAST7.926e-1828.11Sphingosine-1-phosphate lyase OS=Saccharomyces cer... [more]
MFNA_METTP3.012e-1728.11L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_METHJ4.349e-1629.69L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_METAC8.202e-1528.64L-tyrosine decarboxylase OS=Methanosarcina acetivo... [more]
MFNA_ARCFU1.071e-1428.11L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_METKA1.399e-1429.73L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1CB12FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257212 ID=DY257212; Name=DY257212; organism=Citrus sinensis; type=EST; length=1280bp
CTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTACGTTGAC
ATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGTGAACAT
TATAGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGGCTGTCG
GAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGCCTTGCA
TTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCCCTTTGA
CAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGGAGAAAT
TTGCAAGGTATTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGTCGGAAGGC
TACTACGTGATGGACCCAGCCAAAGCTGTAGAAATGGTGGATGAAAACAC
TATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAATGGAGAATTTGAAG
ATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGAACAAGGAAACAGGA
TGGGATACTCCAATTCATGTTGATGCTGCTAGTGGTGGCTTCATTGCACC
ATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGGTGAAGA
GTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTATGCTGGTATTGGT
TGGGTTGTTTGGAGAAAAAAAGAAGAATTGGCTGAAGAACTCATCTTCCA
CATCAATTACCTAGGAGCTTATCAACCCACCTTCCCCTCAATTTTTTCTA
AGGTCCTAGCCAAGTAATTCCTCCGTACTACCATCTCTTCCCCCTTGGTT
TTTGAGGAAACCCCCACTGCGCTGGACAATTTTTCCGAACAATGCCAAGG
TCGCTGAAAAAACGCCATAACAATCCCGCCGCCTTCCCGTTTGTGCCACA
GAACAACGGGTTTCCTAATCTCGCCTTTCTCCCCAAGTCACACGACACCC
CCCGTTCTACTTTCCAGTGGGCCCATATGTTTCCTCCCCTTTTAGTGTAA
ATGCCCCCGAGCGCTCGAACGCCCCCTACACAGTCCCGAATTCCTCACCT
TTTAAGCCCCCCGTCCTCCCGGAGAAACGATTTCCTACGCTTCACTGCTN
CGAACAGCCCTATATGGCTCACCAANTGATGCACTAACTAACTTTGCATG
AGATACTATCTACTCTTCTTGTCTGCTTTTACGCCAGAAACCCCCTCCTC
ACGTCCCTCTTGCTTCCACTGACAGTAGAGATCGCCTACACACGAGCATG
CTCAACGAGTACACTATGTCTATACCTAAT
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