FC871254

Overview
NameFC871254
Unique NameFC871254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.800e-45
Identity = 102/202 (50.50%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            VVGWYHSHPGFGCWLS VDI+TQQSFE L +RAVAVVVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ + IHGLN+HYYS  I  R                W D L L   D  SK      +E L L   Y KA +EE  L  +   +A VGR D ++ L E     +  N + +L   +   IF
Sbjct:   98 VVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADNLKLG--DVRSKR-----EEALKLIESYGKAFEEEKNLAGKNPDMAKVGRIDYRRRLLEKCEESIMENTIYSLLYSIHRYIF 292          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.732e-43
Identity = 92/209 (44.02%), Postives = 124/209 (59.33%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELP------PEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 638
            VVGWYHSHPGFGCWLS VD+NTQQSFEAL+ RAVAVVVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ + +HGL   YYS+ + YR                W D L +  +    K  E+  + +  L   +NK + E  E P        +  +   G+ +AK+ L+   S+L++ ++   L  M++
Sbjct:  106 VVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 206
            VVGWYHSHPG+GCWLSG+D+NTQ++ +      VA+V+DP +++  GKV I AFR
Sbjct:  141 VVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFR 195          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   48 VGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344
            VGWYHSHPG+GCWLSG+D++TQ   +   +  VA+VVDP+++V  GKV + AFR          +EP +  +    LNK  I+ F +H   + YY + I+Y
Sbjct:  131 VGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTI--PLNK--IEDFGVH--CKQYYPLEISY 225          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa GN=rri-1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRH-YYSIAINY 344
            V+GWYHSHPG+GCWLSG+D+ TQ   +  N+  VAVV+DP ++V + KV I AFR I P+ +        TT +   +    ++ F  G + H YY++ + +
Sbjct:  122 VIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTI-PEGIKPFAATNTTTGDGQSVPLNKVEDF--GAHSHRYYALDVEH 220          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans GN=rri1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 57/200 (28.50%), Postives = 89/200 (44.50%), Query Frame = 3
Query:   48 VGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQ-------DAKKHLEEHVSNLMSSNIVQTL 623
            VGWYHSHPG+GCWLSG+D++T Q  + ++   VAVV+DP +++  GKV I AFR          +E  +       LNK       H    HYYS+ ++                  W   L+         T +   ++ML+L+ K  +  +  +  PP   A   V  Q       D ++ + E V  L+++ +   L
Sbjct:  130 VGWYHSHPGYGCWLSGIDVST-QDMQQMSGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNKAE-DFGAHA--SHYYSLEVSLFKSALDTEILSLLWNKYWVATLSQSPL---FTTRDYGSKQMLDLSQKTRRVARGIESNPPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEVKMQL 322          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344
            VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +AVV+DP ++V  GKV I AFR  +       + P +  S    +    I+ F +H   + YYS+ + Y
Sbjct:  137 VVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGY----KPPDEPVSEYQTIPLNKIEDFGVH--CKQYYSLDVTY 232          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 59/213 (27.70%), Postives = 98/213 (46.01%), Query Frame = 3
Query:   48 VGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLG-QEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641
            +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR     T   G + P +  S    +    I+ F +H   + YY++ + Y                 W + L+      ++   E T  ++ +L+ K  ++            ++  D    +KLA A    +D+ K   E +  LMS  I   L   ++T
Sbjct:  132 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR-----TYPKGYKPPDEGPSEYQTIPLNKIEDFGVH--CKQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---EYTTGQVFDLSEKLEQSEAQLGRGSFMLGLESHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQINT 331          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 3
Query:   51 GWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            GWYHSHPG+GCWLSG+D+NTQ + +  N   +AVV+DP ++V  GKV I AFR
Sbjct:  131 GWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFR 183          
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_YARLI (COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica GN=RRI1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGL-NRHYYSIAINY 344
            +VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVVVDP +++  GKV I AFR          + P++ T      + P  +A  +G  +  YY + +++
Sbjct:  134 IVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTISAGKVEIGAFRTYPKDY----KPPKKATKQNQDQSVPLSKAKDYGAHSERYYELDVSF 231          
The following BLAST results are available for this feature:
BLAST of FC871254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RPN11_ENCCU6.800e-4550.5026S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL3.732e-4344.02Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
CSN5_USTMA5.255e-1358.18COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_DROME5.255e-1342.57COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_NEUCR6.864e-1340.20COP9 signalosome complex subunit 5 OS=Neurospora c... [more]
CSN5_EMENI6.864e-1328.50COP9 signalosome complex subunit 5 OS=Emericella n... [more]
CSN5A_ARATH1.529e-1240.20COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_XENLA1.997e-1227.70COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_CRYNE1.997e-1260.38COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]
CSN5_YARLI2.608e-1237.25COP9 signalosome complex subunit 5 OS=Yarrowia lip... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871254 ID=FC871254; Name=FC871254; organism=Citrus sinensis; type=EST; length=819bp
CGCACATGTTTGTTCTGCACAGTCGGACTGTATTACCATAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAAGCCTATCCTTTTGTCTTGGATGTGCTGGGTTTGTGCTGA
ACCGTATTATATGAATTGT
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