FC871254

Overview
NameFC871254
Unique NameFC871254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe GN=csn5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 43/107 (40.19%), Postives = 58/107 (54.21%), Query Frame = 3 
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQTMMLGQEPRQTTSNLGH-----LNKPSIQAFIHGLNRH-YYSIAINY 344
            V+GWYHSHP +GCWLSGVD+ TQ+  +      VAVV+DP +S++   V I AFR     T  +G +    T +  H      N PS +    G +   YYS+ I Y
Sbjct:  113 VIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFR-----TYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITY 214
[Close]
BLAST of FC871254 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii GN=RRI1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:   45 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 206
            +VGWYHSHPG+GCWLSG+D+ TQ   +      +A+V+DP+++  +GKV I AFR
Sbjct:  141 IVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFR 195
The following BLAST results are available for this feature:
BLAST of FC871254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSN5_SCHPO2.884e-1140.19COP9 signalosome complex subunit 5 OS=Schizosaccha... [more]
CSN5_DEBHA3.766e-1152.73COP9 signalosome complex subunit 5 OS=Debaryomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871254 ID=FC871254; Name=FC871254; organism=Citrus sinensis; type=EST; length=819bp
CGCACATGTTTGTTCTGCACAGTCGGACTGTATTACCATAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAAGCCTATCCTTTTGTCTTGGATGTGCTGGGTTTGTGCTGA
ACCGTATTATATGAATTGT
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