FC871251

Overview
NameFC871251
Unique NameFC871251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 5.970e-32
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 3
Query:   45 STVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S + +P V +   RPD+V ++     +N RQ +A + KAG Q SAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGG MFAP K++RRWHR +N+ QKRY
Sbjct:   19 SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.062e-16
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  156 KAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            KAG Q SA SWGTGRAV RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK     +R+
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRF 68          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 33/109 (30.28%), Postives = 55/109 (50.46%), Query Frame = 3
Query:   27 MAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            M  +    + +P +     RPD++     +      QP+ +  +AG +TSA+ WG+GR   R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+
Sbjct:    8 MEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNG-----SKAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRF 111          
The following BLAST results are available for this feature:
BLAST of FC871251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_CAEEL5.970e-3261.1760S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI2.062e-1660.6160S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METS35.810e-1130.2850S ribosomal protein L4P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF08FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871251 ID=FC871251; Name=FC871251; organism=Citrus sinensis; type=EST; length=405bp
CAACCGGCCAGTCTTTGGAAGGTGACATGGCCGCCGACGCAAGCTCCACC
GTCCCCATGCCCGAGGTCAAGAAGGCCTCTAACCGACCCGACATCGTGGG
CTACCTTCACTCTAACAACACCAAGAACAGCCGCCAGCCGTACGCCGATT
CCAAGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGC
GCCGTCACCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGG
CCAGGGAGCCTTCGGTAACATGTGACGCGGTGGTCGCATGTTCGCTCCCA
CAAAGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGA
TATGCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCCACACTTGAGA
GGGCC
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